Strain Fitness in Pseudomonas putida KT2440 around PP_0298

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0297 and PP_5441 are separated by 129 nucleotidesPP_5441 and PP_0298 are separated by 171 nucleotidesPP_0298 and PP_0299 are separated by 119 nucleotidesPP_0299 and PP_0300 are separated by 131 nucleotides PP_0297: PP_0297 - L-serine dehydratase, at 356,656 to 358,032 _0297 PP_5441: PP_5441 - protein of unknown function, at 358,162 to 358,362 _5441 PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640 _0298 PP_0299: PP_0299 - conserved protein of unknown function, at 359,760 to 360,218 _0299 PP_0300: PP_0300 - putative metallopeptidase, at 360,350 to 361,936 _0300 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2 3at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.610 kb on + strand, within PP_0297at 357.938 kb on + strandat 357.969 kb on + strandat 357.970 kb on - strandat 357.982 kb on + strandat 357.982 kb on + strandat 357.982 kb on + strandat 357.983 kb on - strandat 358.079 kb on + strandat 358.080 kb on - strandat 358.102 kb on - strandat 358.102 kb on - strandat 358.161 kb on + strandat 358.161 kb on + strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.172 kb on - strandat 358.172 kb on - strandat 358.245 kb on + strand, within PP_5441at 358.245 kb on + strand, within PP_5441at 358.245 kb on + strand, within PP_5441at 358.246 kb on - strand, within PP_5441at 358.287 kb on - strand, within PP_5441at 358.287 kb on - strand, within PP_5441at 358.373 kb on - strandat 358.448 kb on + strandat 358.449 kb on - strandat 358.475 kb on + strandat 358.476 kb on - strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.486 kb on - strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.602 kb on - strandat 358.602 kb on - strandat 359.145 kb on + strand, within PP_0298at 359.281 kb on + strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.282 kb on - strand, within PP_0298at 359.350 kb on + strand, within PP_0298at 359.351 kb on - strand, within PP_0298at 359.353 kb on + strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.467 kb on + strand, within PP_0298at 359.476 kb on + strand, within PP_0298at 359.630 kb on + strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.820 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.951 kb on + strand, within PP_0299at 360.034 kb on - strand, within PP_0299at 360.040 kb on - strand, within PP_0299at 360.060 kb on + strand, within PP_0299at 360.126 kb on + strand, within PP_0299at 360.147 kb on + strand, within PP_0299at 360.191 kb on + strandat 360.192 kb on - strandat 360.192 kb on - strandat 360.290 kb on - strandat 360.290 kb on - strandat 360.293 kb on + strandat 360.330 kb on - strandat 360.387 kb on + strandat 360.430 kb on + strandat 360.458 kb on - strandat 360.574 kb on - strand, within PP_0300at 360.616 kb on - strand, within PP_0300

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
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357,562 + PP_0297 0.66 +0.8
357,562 + PP_0297 0.66 -1.1
357,562 + PP_0297 0.66 +0.7
357,562 + PP_0297 0.66 -0.1
357,562 + PP_0297 0.66 -1.0
357,563 - PP_0297 0.66 -0.9
357,563 - PP_0297 0.66 -1.0
357,563 - PP_0297 0.66 -0.8
357,565 + PP_0297 0.66 -0.1
357,565 + PP_0297 0.66 -1.1
357,565 + PP_0297 0.66 +0.9
357,566 - PP_0297 0.66 +0.8
357,566 - PP_0297 0.66 -0.7
357,566 - PP_0297 0.66 -0.1
357,610 + PP_0297 0.69 +1.0
357,938 + +1.0
357,969 + +2.9
357,970 - -0.1
357,982 + +0.2
357,982 + +0.3
357,982 + -0.0
357,983 - -0.4
358,079 + -0.0
358,080 - +0.9
358,102 - -0.0
358,102 - +0.0
358,161 + -1.3
358,161 + -0.4
358,162 - +0.4
358,162 - -0.2
358,162 - -0.2
358,162 - -0.9
358,172 - +0.0
358,172 - -0.1
358,245 + PP_5441 0.41 +2.6
358,245 + PP_5441 0.41 +1.0
358,245 + PP_5441 0.41 +0.3
358,246 - PP_5441 0.42 +0.8
358,287 - PP_5441 0.62 -0.7
358,287 - PP_5441 0.62 -0.5
358,373 - -0.1
358,448 + +0.0
358,449 - +0.1
358,475 + +1.6
358,476 - +0.0
358,485 + +2.2
358,485 + -1.3
358,485 + +0.2
358,485 + +0.8
358,485 + -0.8
358,486 - +0.3
358,601 + +1.5
358,601 + -0.6
358,601 + -0.0
358,601 + -0.3
358,602 - -1.0
358,602 - +0.3
359,145 + PP_0298 0.55 +1.4
359,281 + PP_0298 0.67 -0.1
359,282 - PP_0298 0.68 -0.0
359,282 - PP_0298 0.68 +0.2
359,282 - PP_0298 0.68 +0.2
359,282 - PP_0298 0.68 +0.2
359,282 - PP_0298 0.68 -0.4
359,282 - PP_0298 0.68 -0.1
359,282 - PP_0298 0.68 +0.1
359,350 + PP_0298 0.74 -2.1
359,351 - PP_0298 0.74 -0.3
359,353 + PP_0298 0.74 -0.2
359,354 - PP_0298 0.74 -0.1
359,354 - PP_0298 0.74 -0.2
359,354 - PP_0298 0.74 +0.8
359,467 + PP_0298 0.84 -0.6
359,476 + PP_0298 0.85 +0.8
359,630 + -2.0
359,631 - -0.0
359,631 - +0.6
359,631 - -0.1
359,631 - -0.4
359,631 - -0.2
359,820 + PP_0299 0.13 +0.4
359,851 + PP_0299 0.20 -0.7
359,851 + PP_0299 0.20 +0.4
359,851 + PP_0299 0.20 -0.3
359,851 + PP_0299 0.20 -1.1
359,851 + PP_0299 0.20 -1.1
359,852 - PP_0299 0.20 +0.5
359,852 - PP_0299 0.20 +0.2
359,852 - PP_0299 0.20 +0.7
359,852 - PP_0299 0.20 +0.1
359,852 - PP_0299 0.20 -0.4
359,852 - PP_0299 0.20 -1.1
359,951 + PP_0299 0.42 -0.1
360,034 - PP_0299 0.60 -0.5
360,040 - PP_0299 0.61 +0.6
360,060 + PP_0299 0.65 -1.1
360,126 + PP_0299 0.80 -0.4
360,147 + PP_0299 0.84 -1.7
360,191 + +0.3
360,192 - -0.6
360,192 - +0.6
360,290 - +0.6
360,290 - +0.3
360,293 + +0.1
360,330 - -0.9
360,387 + +0.1
360,430 + +1.0
360,458 - -0.7
360,574 - PP_0300 0.14 +0.0
360,616 - PP_0300 0.17 +0.2

Or see this region's nucleotide sequence