Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3660 and PP_3661 are separated by 112 nucleotides PP_3661 and PP_3662 are separated by 208 nucleotides
PP_3660: PP_3660 - Transcriptional regulator, LysR family, at 4,156,991 to 4,157,878
_3660
PP_3661: PP_3661 - conserved membrane protein of unknown function, UPF0324 family, at 4,157,991 to 4,159,052
_3661
PP_3662: PP_3662 - conserved protein of unknown function, at 4,159,261 to 4,160,634
_3662
Position (kb) 4157
4158
4159
4160 Strain fitness (log2 ratio) -2
-1
0
1 at 4157.105 kb on + strand, within PP_3660 at 4157.196 kb on - strand, within PP_3660 at 4157.414 kb on - strand, within PP_3660 at 4157.458 kb on + strand, within PP_3660 at 4157.556 kb on + strand, within PP_3660 at 4157.557 kb on - strand, within PP_3660 at 4157.557 kb on - strand, within PP_3660 at 4157.568 kb on + strand, within PP_3660 at 4157.896 kb on + strand at 4158.113 kb on + strand, within PP_3661 at 4158.168 kb on + strand, within PP_3661 at 4158.168 kb on + strand, within PP_3661 at 4158.168 kb on + strand, within PP_3661 at 4158.168 kb on + strand, within PP_3661 at 4158.168 kb on + strand, within PP_3661 at 4158.169 kb on - strand, within PP_3661 at 4158.169 kb on - strand, within PP_3661 at 4158.169 kb on - strand, within PP_3661 at 4158.241 kb on + strand, within PP_3661 at 4158.241 kb on + strand, within PP_3661 at 4158.242 kb on - strand, within PP_3661 at 4158.508 kb on + strand, within PP_3661 at 4158.509 kb on - strand, within PP_3661 at 4158.509 kb on - strand, within PP_3661 at 4158.509 kb on - strand, within PP_3661 at 4158.509 kb on - strand, within PP_3661 at 4158.521 kb on + strand, within PP_3661 at 4158.522 kb on - strand, within PP_3661 at 4158.634 kb on + strand, within PP_3661 at 4158.635 kb on - strand, within PP_3661 at 4158.718 kb on + strand, within PP_3661 at 4159.131 kb on + strand at 4159.131 kb on + strand at 4159.132 kb on - strand at 4159.258 kb on + strand at 4159.258 kb on + strand at 4159.259 kb on - strand at 4159.259 kb on - strand at 4159.369 kb on + strand at 4159.369 kb on + strand at 4159.437 kb on + strand, within PP_3662 at 4159.437 kb on + strand, within PP_3662 at 4159.437 kb on + strand, within PP_3662 at 4159.450 kb on + strand, within PP_3662 at 4159.450 kb on + strand, within PP_3662 at 4159.450 kb on + strand, within PP_3662 at 4159.451 kb on - strand, within PP_3662 at 4159.451 kb on - strand, within PP_3662 at 4159.657 kb on + strand, within PP_3662 at 4159.657 kb on + strand, within PP_3662 at 4159.658 kb on - strand, within PP_3662 at 4159.756 kb on + strand, within PP_3662 at 4159.756 kb on + strand, within PP_3662 at 4159.756 kb on + strand, within PP_3662 at 4159.757 kb on - strand, within PP_3662 at 4159.763 kb on - strand, within PP_3662 at 4159.763 kb on - strand, within PP_3662 at 4159.763 kb on - strand, within PP_3662
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM remove 4,157,105 + PP_3660 0.13 +0.8 4,157,196 - PP_3660 0.23 +0.4 4,157,414 - PP_3660 0.48 +0.2 4,157,458 + PP_3660 0.53 +0.9 4,157,556 + PP_3660 0.64 +0.3 4,157,557 - PP_3660 0.64 -0.6 4,157,557 - PP_3660 0.64 -0.7 4,157,568 + PP_3660 0.65 -2.5 4,157,896 + +0.4 4,158,113 + PP_3661 0.11 -0.2 4,158,168 + PP_3661 0.17 -0.8 4,158,168 + PP_3661 0.17 +0.0 4,158,168 + PP_3661 0.17 -0.3 4,158,168 + PP_3661 0.17 -0.3 4,158,168 + PP_3661 0.17 +0.0 4,158,169 - PP_3661 0.17 -0.9 4,158,169 - PP_3661 0.17 +0.5 4,158,169 - PP_3661 0.17 -0.9 4,158,241 + PP_3661 0.24 +0.6 4,158,241 + PP_3661 0.24 +0.1 4,158,242 - PP_3661 0.24 -0.6 4,158,508 + PP_3661 0.49 +0.4 4,158,509 - PP_3661 0.49 -0.5 4,158,509 - PP_3661 0.49 -0.5 4,158,509 - PP_3661 0.49 -0.5 4,158,509 - PP_3661 0.49 -1.7 4,158,521 + PP_3661 0.50 -0.9 4,158,522 - PP_3661 0.50 -0.4 4,158,634 + PP_3661 0.61 -0.0 4,158,635 - PP_3661 0.61 +1.1 4,158,718 + PP_3661 0.68 -1.2 4,159,131 + -1.2 4,159,131 + +0.0 4,159,132 - -1.0 4,159,258 + +0.9 4,159,258 + -0.1 4,159,259 - -2.0 4,159,259 - -0.0 4,159,369 + +0.5 4,159,369 + -1.8 4,159,437 + PP_3662 0.13 +0.9 4,159,437 + PP_3662 0.13 +0.8 4,159,437 + PP_3662 0.13 -0.2 4,159,450 + PP_3662 0.14 -0.5 4,159,450 + PP_3662 0.14 +1.4 4,159,450 + PP_3662 0.14 -2.3 4,159,451 - PP_3662 0.14 -0.1 4,159,451 - PP_3662 0.14 -1.8 4,159,657 + PP_3662 0.29 +1.7 4,159,657 + PP_3662 0.29 -0.3 4,159,658 - PP_3662 0.29 -1.8 4,159,756 + PP_3662 0.36 -1.3 4,159,756 + PP_3662 0.36 +0.3 4,159,756 + PP_3662 0.36 -0.7 4,159,757 - PP_3662 0.36 +0.1 4,159,763 - PP_3662 0.37 +0.1 4,159,763 - PP_3662 0.37 +1.4 4,159,763 - PP_3662 0.37 -0.2
Or see this region's nucleotide sequence