Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0194 and PP_0195 overlap by 22 nucleotides PP_0195 and PP_0196 are separated by 50 nucleotides PP_0196 and PP_0197 overlap by 1 nucleotides PP_0197 and PP_0198 are separated by 99 nucleotides
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772
_0195
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
PP_0197: PP_0197 - conserved protein of unknown function, at 247,733 to 248,320
_0197
PP_0198: PP_0198 - putative transporter, at 248,420 to 249,052
_0198
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.053 kb on + strand, within PP_0194 at 245.629 kb on + strand, within PP_0195 at 245.630 kb on - strand, within PP_0195 at 245.735 kb on + strand at 245.735 kb on + strand at 245.735 kb on + strand at 245.736 kb on - strand at 245.807 kb on - strand at 245.848 kb on + strand at 245.849 kb on - strand at 245.849 kb on - strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.873 kb on - strand at 245.873 kb on - strand at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand at 246.192 kb on - strand, within PP_0196 at 246.502 kb on - strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.952 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 247.365 kb on + strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.412 kb on + strand, within PP_0196 at 247.587 kb on + strand at 247.835 kb on - strand, within PP_0197 at 248.165 kb on - strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.281 kb on - strand at 248.380 kb on - strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.672 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.682 kb on - strand, within PP_0198
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM remove 245,053 + PP_0194 0.74 +0.5 245,629 + PP_0195 0.70 +0.6 245,630 - PP_0195 0.70 +0.2 245,735 + +0.7 245,735 + -0.8 245,735 + +1.9 245,736 - +0.1 245,807 - -0.5 245,848 + -0.2 245,849 - +0.3 245,849 - +0.4 245,872 + +0.1 245,872 + -0.1 245,872 + +0.8 245,872 + +0.5 245,873 - +0.3 245,873 - +0.3 246,069 + PP_0196 0.13 +0.5 246,069 + PP_0196 0.13 +0.9 246,069 + PP_0196 0.13 +0.3 246,069 + PP_0196 0.13 -0.1 246,069 + PP_0196 0.13 +0.8 246,070 - PP_0196 0.13 +1.6 246,070 - PP_0196 0.13 +0.2 246,190 - PP_0196 0.19 -0.1 246,190 - PP_0196 0.19 -1.5 246,190 - +2.2 246,192 - PP_0196 0.19 +0.7 246,502 - PP_0196 0.36 +0.3 246,567 + PP_0196 0.39 -0.5 246,567 + PP_0196 0.39 +0.7 246,607 - PP_0196 0.41 -0.4 246,607 - PP_0196 0.41 +0.0 246,842 + PP_0196 0.53 -1.8 246,842 + PP_0196 0.53 +0.5 246,952 + PP_0196 0.59 +0.5 246,957 + PP_0196 0.59 +0.9 246,957 + PP_0196 0.59 +0.3 246,958 - PP_0196 0.59 -0.1 246,958 - PP_0196 0.59 +0.4 246,958 - PP_0196 0.59 -0.4 246,958 - PP_0196 0.59 -0.2 246,958 - PP_0196 0.59 +0.7 247,365 + PP_0196 0.81 -0.7 247,366 - PP_0196 0.81 +0.7 247,366 - PP_0196 0.81 +1.7 247,366 - PP_0196 0.81 -2.3 247,412 + PP_0196 0.83 -0.3 247,587 + -1.4 247,835 - PP_0197 0.17 -1.0 248,165 - PP_0197 0.73 +0.5 248,233 + PP_0197 0.85 +0.3 248,233 + PP_0197 0.85 -2.8 248,233 + PP_0197 0.85 -0.3 248,233 + PP_0197 0.85 -0.9 248,234 - PP_0197 0.85 -0.1 248,234 - PP_0197 0.85 -1.1 248,281 - -0.2 248,380 - +0.5 248,433 + +0.3 248,433 + +1.0 248,433 + +0.7 248,433 + +0.2 248,433 + -2.9 248,434 - +1.2 248,434 - +0.1 248,434 - +0.5 248,434 - +0.6 248,672 + PP_0198 0.40 -1.0 248,681 + PP_0198 0.41 -1.0 248,681 + PP_0198 0.41 -0.1 248,682 - PP_0198 0.41 -0.7
Or see this region's nucleotide sequence