Experiment: mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0635 and PP_0636 are separated by 273 nucleotides PP_0636 and PP_0637 are separated by 630 nucleotides
PP_0635: PP_0635 - Group II intron-encoding maturase, at 741,900 to 743,321
_0635
PP_0636: PP_0636 - Cold shock DNA-binding domain protein, at 743,595 to 744,335
_0636
PP_0637: PP_0637 - transposase, at 744,966 to 746,498
_0637
Position (kb) 743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 743.385 kb on + strand at 743.425 kb on + strand at 743.450 kb on + strand at 743.451 kb on - strand at 743.451 kb on - strand at 743.454 kb on + strand at 743.454 kb on + strand at 743.490 kb on + strand at 743.490 kb on + strand at 743.490 kb on + strand at 743.491 kb on - strand at 743.491 kb on - strand at 743.491 kb on - strand at 743.521 kb on + strand at 743.522 kb on - strand at 743.522 kb on - strand at 743.552 kb on + strand at 743.553 kb on - strand at 743.569 kb on + strand at 743.570 kb on - strand at 743.596 kb on + strand at 743.597 kb on - strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.617 kb on - strand at 743.617 kb on - strand at 743.678 kb on + strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.706 kb on + strand, within PP_0636 at 743.769 kb on + strand, within PP_0636 at 743.769 kb on + strand, within PP_0636 at 743.848 kb on + strand, within PP_0636 at 743.876 kb on - strand, within PP_0636 at 743.882 kb on - strand, within PP_0636 at 743.882 kb on - strand, within PP_0636 at 743.908 kb on + strand, within PP_0636 at 743.922 kb on + strand, within PP_0636 at 743.922 kb on + strand, within PP_0636 at 743.922 kb on + strand at 743.923 kb on - strand, within PP_0636 at 743.967 kb on + strand, within PP_0636 at 743.967 kb on + strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.970 kb on + strand, within PP_0636 at 743.987 kb on + strand, within PP_0636 at 743.988 kb on - strand, within PP_0636 at 743.988 kb on - strand, within PP_0636 at 744.066 kb on + strand, within PP_0636 at 744.088 kb on + strand, within PP_0636 at 744.094 kb on + strand, within PP_0636 at 744.207 kb on + strand, within PP_0636 at 744.208 kb on - strand, within PP_0636 at 744.308 kb on + strand at 744.309 kb on - strand at 744.309 kb on - strand at 744.369 kb on + strand at 744.369 kb on + strand at 744.380 kb on - strand at 744.380 kb on - strand at 744.399 kb on + strand at 744.400 kb on - strand at 744.455 kb on - strand at 744.475 kb on - strand at 744.532 kb on - strand at 744.552 kb on + strand at 744.552 kb on + strand at 744.572 kb on + strand at 744.572 kb on + strand at 744.671 kb on - strand at 744.729 kb on + strand at 744.733 kb on - strand at 744.785 kb on - strand at 744.888 kb on + strand at 744.907 kb on - strand at 744.907 kb on - strand at 744.916 kb on + strand at 744.916 kb on + strand at 744.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM remove 743,385 + -1.5 743,425 + -0.6 743,450 + -0.4 743,451 - +1.1 743,451 - +0.6 743,454 + -0.4 743,454 + -1.9 743,490 + -0.4 743,490 + +0.6 743,490 + +0.7 743,491 - -0.4 743,491 - +3.0 743,491 - -0.4 743,521 + +0.1 743,522 - +1.4 743,522 - +0.4 743,552 + -0.6 743,553 - +0.2 743,569 + -2.1 743,570 - +0.5 743,596 + +0.2 743,597 - -0.4 743,612 + +0.0 743,612 + -0.8 743,612 + +1.1 743,612 + -0.3 743,616 + +0.3 743,616 + +1.5 743,616 + +0.1 743,616 + -0.6 743,616 + -0.1 743,617 - +0.3 743,617 - +1.2 743,678 + PP_0636 0.11 +2.0 743,679 - PP_0636 0.11 +0.5 743,679 - PP_0636 0.11 +0.9 743,679 - PP_0636 0.11 +0.6 743,679 - PP_0636 0.11 +0.2 743,706 + PP_0636 0.15 +0.4 743,769 + PP_0636 0.23 +1.2 743,769 + PP_0636 0.23 +0.4 743,848 + PP_0636 0.34 +0.5 743,876 - PP_0636 0.38 -2.6 743,882 - PP_0636 0.39 -1.2 743,882 - PP_0636 0.39 -0.4 743,908 + PP_0636 0.42 -0.1 743,922 + PP_0636 0.44 -1.9 743,922 + PP_0636 0.44 +0.2 743,922 + +0.4 743,923 - PP_0636 0.44 +1.3 743,967 + PP_0636 0.50 +1.8 743,967 + PP_0636 0.50 +1.4 743,968 - PP_0636 0.50 +0.4 743,968 - PP_0636 0.50 +1.6 743,968 - PP_0636 0.50 +1.1 743,970 + PP_0636 0.51 -0.3 743,987 + PP_0636 0.53 +1.0 743,988 - PP_0636 0.53 -1.0 743,988 - PP_0636 0.53 -1.0 744,066 + PP_0636 0.64 +0.6 744,088 + PP_0636 0.67 +1.3 744,094 + PP_0636 0.67 -1.0 744,207 + PP_0636 0.83 -0.2 744,208 - PP_0636 0.83 +0.2 744,308 + +2.0 744,309 - +0.7 744,309 - +1.3 744,369 + -1.7 744,369 + +1.2 744,380 - -0.0 744,380 - -0.6 744,399 + +0.1 744,400 - -0.0 744,455 - +0.4 744,475 - -0.7 744,532 - -0.3 744,552 + +0.2 744,552 + +0.7 744,572 + +2.3 744,572 + -0.9 744,671 - -0.3 744,729 + -0.1 744,733 - -0.9 744,785 - +1.1 744,888 + -1.4 744,907 - +0.3 744,907 - +0.3 744,916 + +0.2 744,916 + -1.0 744,945 - -1.1
Or see this region's nucleotide sequence