Strain Fitness in Pseudomonas putida KT2440 around PP_0358

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0357 and PP_0358 are separated by 232 nucleotidesPP_0358 and PP_0359 are separated by 64 nucleotides PP_0357: PP_0357 - ACT domain protein, at 435,649 to 436,167 _0357 PP_0358: PP_0358 - conserved membrane protein of unknown function, at 436,400 to 437,287 _0358 PP_0359: PP_0359 - serine/threonine protein kinase, at 437,352 to 438,359 _0359 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.405 kb on + strandat 435.406 kb on - strandat 435.406 kb on - strandat 435.437 kb on + strandat 435.438 kb on - strandat 435.449 kb on + strandat 435.470 kb on - strandat 435.470 kb on - strandat 435.486 kb on + strandat 435.490 kb on + strandat 435.490 kb on + strandat 435.588 kb on + strandat 435.589 kb on - strandat 435.589 kb on - strandat 435.589 kb on - strandat 435.590 kb on + strandat 435.590 kb on + strandat 435.662 kb on + strandat 435.663 kb on - strandat 435.663 kb on - strandat 435.671 kb on + strandat 435.671 kb on + strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.672 kb on - strandat 435.705 kb on + strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.706 kb on - strand, within PP_0357at 435.735 kb on + strand, within PP_0357at 435.815 kb on - strand, within PP_0357at 435.853 kb on + strand, within PP_0357at 435.853 kb on + strand, within PP_0357at 435.854 kb on - strand, within PP_0357at 435.989 kb on + strand, within PP_0357at 435.989 kb on + strand, within PP_0357at 436.234 kb on + strandat 436.235 kb on - strandat 436.340 kb on - strandat 436.367 kb on + strandat 436.368 kb on - strandat 436.515 kb on - strand, within PP_0358at 436.573 kb on - strand, within PP_0358at 436.604 kb on + strand, within PP_0358at 436.663 kb on + strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.665 kb on + strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.703 kb on + strand, within PP_0358at 436.784 kb on - strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.798 kb on - strand, within PP_0358at 436.830 kb on - strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.126 kb on + strand, within PP_0358at 437.127 kb on - strand, within PP_0358at 437.211 kb on + strandat 437.212 kb on - strandat 437.238 kb on + strandat 437.238 kb on + strandat 437.239 kb on - strandat 437.239 kb on - strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.260 kb on - strandat 437.315 kb on - strandat 437.315 kb on - strandat 437.331 kb on + strandat 437.353 kb on + strandat 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.500 kb on + strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.576 kb on - strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.846 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 438.212 kb on - strand, within PP_0359at 438.226 kb on + strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
remove
435,405 + -0.1
435,405 + -1.1
435,405 + +1.5
435,405 + -0.5
435,405 + -0.6
435,406 - +0.5
435,406 - +0.8
435,437 + -0.1
435,438 - +0.4
435,449 + +0.1
435,470 - -1.6
435,470 - -0.4
435,486 + +0.2
435,490 + +0.8
435,490 + +0.6
435,588 + -0.5
435,589 - -0.9
435,589 - +0.6
435,589 - +0.4
435,590 + -0.6
435,590 + -1.1
435,662 + -0.4
435,663 - -0.9
435,663 - +0.2
435,671 + -0.6
435,671 + +0.7
435,672 - +0.2
435,672 - -0.5
435,672 - -0.2
435,672 - +0.0
435,705 + PP_0357 0.11 -0.5
435,706 - PP_0357 0.11 +2.0
435,706 - PP_0357 0.11 -0.4
435,706 - PP_0357 0.11 +0.5
435,735 + PP_0357 0.17 +0.1
435,815 - PP_0357 0.32 -0.5
435,853 + PP_0357 0.39 -0.4
435,853 + PP_0357 0.39 -0.4
435,854 - PP_0357 0.39 +0.4
435,989 + PP_0357 0.66 -0.6
435,989 + PP_0357 0.66 -0.3
436,234 + +0.8
436,235 - +0.8
436,340 - +0.7
436,367 + -0.1
436,368 - +0.6
436,515 - PP_0358 0.13 -1.3
436,573 - PP_0358 0.19 +0.2
436,604 + PP_0358 0.23 -0.0
436,663 + PP_0358 0.30 -0.7
436,664 - PP_0358 0.30 -0.4
436,664 - PP_0358 0.30 -0.6
436,665 + PP_0358 0.30 -3.1
436,666 - PP_0358 0.30 +0.8
436,666 - PP_0358 0.30 -2.3
436,703 + PP_0358 0.34 +0.8
436,784 - PP_0358 0.43 -0.3
436,797 + PP_0358 0.45 -1.4
436,797 + PP_0358 0.45 -2.2
436,798 - PP_0358 0.45 -2.9
436,830 - PP_0358 0.48 +0.1
436,946 + PP_0358 0.61 -0.9
436,946 + PP_0358 0.61 -1.1
436,946 + PP_0358 0.61 -0.9
436,946 + PP_0358 0.61 -1.2
436,947 - PP_0358 0.62 -1.8
436,947 - PP_0358 0.62 -1.7
436,947 - PP_0358 0.62 -2.0
436,968 + PP_0358 0.64 -1.2
436,968 + PP_0358 0.64 -3.2
436,968 + PP_0358 0.64 -1.3
436,969 - PP_0358 0.64 -0.1
436,969 - PP_0358 0.64 -0.7
436,969 - PP_0358 0.64 +0.1
436,971 + PP_0358 0.64 -2.2
436,971 + PP_0358 0.64 -0.5
436,972 - PP_0358 0.64 +0.4
436,972 - PP_0358 0.64 -1.8
437,019 + PP_0358 0.70 -1.6
437,019 + PP_0358 0.70 -0.9
437,019 + PP_0358 0.70 -0.6
437,019 + PP_0358 0.70 +0.2
437,019 + PP_0358 0.70 -0.7
437,019 + PP_0358 0.70 -0.4
437,019 + PP_0358 0.70 -1.1
437,020 - PP_0358 0.70 -1.7
437,020 - PP_0358 0.70 -0.5
437,126 + PP_0358 0.82 -1.9
437,127 - PP_0358 0.82 -1.1
437,211 + -1.0
437,212 - -2.9
437,238 + -1.1
437,238 + -1.4
437,239 - -1.9
437,239 - +2.2
437,255 + -0.7
437,255 + -1.1
437,255 + -1.5
437,255 + -1.5
437,255 + +0.1
437,256 - -0.8
437,256 - -0.6
437,256 - -1.5
437,256 - -1.6
437,260 - -2.0
437,315 - +2.0
437,315 - +2.2
437,331 + +1.2
437,353 + -2.0
437,498 + PP_0359 0.14 +0.0
437,498 + PP_0359 0.14 +0.6
437,498 + PP_0359 0.14 -2.9
437,498 + PP_0359 0.14 -0.1
437,498 + PP_0359 0.14 +0.9
437,498 + PP_0359 0.14 -1.7
437,499 - PP_0359 0.15 +0.4
437,499 - PP_0359 0.15 +1.5
437,500 + PP_0359 0.15 +0.9
437,501 - PP_0359 0.15 +1.8
437,501 - PP_0359 0.15 +0.7
437,501 - PP_0359 0.15 +0.7
437,501 - PP_0359 0.15 +1.0
437,576 - PP_0359 0.22 +1.6
437,692 + PP_0359 0.34 -0.3
437,692 + PP_0359 0.34 -1.4
437,693 - PP_0359 0.34 +0.1
437,693 - PP_0359 0.34 +1.5
437,693 - PP_0359 0.34 +1.3
437,770 + PP_0359 0.41 -1.3
437,770 + PP_0359 0.41 -1.2
437,770 + PP_0359 0.41 -0.4
437,771 - PP_0359 0.42 +0.4
437,771 - PP_0359 0.42 +1.3
437,771 - PP_0359 0.42 +1.1
437,846 + PP_0359 0.49 -0.2
437,952 + PP_0359 0.60 -0.1
437,952 + PP_0359 0.60 +0.4
437,952 + PP_0359 0.60 -1.1
438,212 - PP_0359 0.85 +0.3
438,226 + PP_0359 0.87 +1.2
438,227 - PP_0359 0.87 -0.0
438,227 - PP_0359 0.87 -0.0
438,227 - PP_0359 0.87 +1.2

Or see this region's nucleotide sequence