Strain Fitness in Pseudomonas putida KT2440 around PP_4630

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
5,252,725	+		PP_4629	0.22	+0.1
5,252,725	+		PP_4629	0.22	-0.1
5,252,746	+		PP_4629	0.27	-0.9
5,252,758	+		PP_4629	0.29	-0.1
5,252,759	-		PP_4629	0.30	+0.3
5,252,887	+		PP_4629	0.59	-0.9
5,252,888	-		PP_4629	0.60	+2.4
5,252,962	+		PP_4629	0.77	-1.0
5,252,962	+		PP_4629	0.77	+0.2
5,252,963	-		PP_4629	0.77	-1.0
5,253,163	+				+0.0
5,253,241	+		PP_5702	0.20	-0.3
5,253,269	+		PP_5702	0.24	+0.1
5,253,334	+		PP_5702	0.35	+1.2
5,253,334	+		PP_5702	0.35	+0.3
5,253,335	-		PP_5702	0.35	+0.2
5,253,631	-		PP_5702	0.83	+0.2
5,253,678	+				-0.6
5,253,678	+				+0.3
5,253,679	-				-0.3
5,253,679	-				+0.8
5,253,728	-				-0.3
5,253,728	-				+0.3
5,253,798	-				-0.3
5,253,851	+		PP_4630	0.14	-1.1
5,254,088	+		PP_4630	0.40	-0.4
5,254,161	+		PP_4630	0.48	-0.8
5,254,162	-		PP_4630	0.48	-0.8
5,254,162	-		PP_4630	0.48	-0.6
5,254,282	-		PP_4630	0.61	-0.6
5,254,317	-		PP_4630	0.65	-0.3
5,254,472	-		PP_4630	0.82	-0.9
5,254,485	+		PP_4630	0.84	-0.4
5,254,486	-		PP_4630	0.84	-0.4
5,254,521	-		PP_4630	0.88	+0.2
5,254,521	-		PP_4630	0.88	-0.9
5,254,639	+				-0.5
5,254,639	+				+1.0
5,254,640	-				-0.2
5,254,669	-				-1.7
5,254,696	+				+1.0
5,254,696	+				+0.0
5,254,696	+				+0.3
5,254,696	+				-0.1
5,254,696	+				+2.2
5,254,696	+				+1.1
5,254,697	-				-0.2
5,254,697	-				-0.7
5,254,697	-				-0.5
5,254,697	-				+2.4
5,254,697	-				-0.9
5,254,701	+				-0.3
5,254,701	+				+0.7
5,254,701	+				+0.4
5,254,701	+				+1.1
5,254,702	-				-0.3
5,254,702	-				-0.0
5,254,702	-				+0.2
5,254,705	-				-2.1
5,254,705	-				-0.4
5,254,705	-				+0.0
5,254,746	+				+0.5
5,254,746	+				+0.8
5,254,747	-				+0.8
5,254,747	-				-0.2
5,254,871	+				-0.8
5,254,872	-				+0.9
5,254,872	-				-0.4
5,254,883	-				+0.1
5,254,883	-				+1.4
5,255,112	+		PP_4631	0.42	-1.7
5,255,112	+		PP_4631	0.42	-0.0
5,255,351	+		PP_4631	0.84	+0.1
5,255,351	+		PP_4631	0.84	-0.3
5,255,351	+		PP_4631	0.84	-1.0
5,255,351	+		PP_4631	0.84	-0.0
5,255,352	-		PP_4631	0.85	+0.5
5,255,448	+				-0.3
5,255,448	+				+0.7
5,255,448	+				-0.8
5,255,448	+				+0.8
5,255,449	-				+0.2
5,255,449	-				+0.5
5,255,596	+		PP_4632	0.17	+0.6
5,255,597	-		PP_4632	0.17	-1.9