Strain Fitness in Pseudomonas putida KT2440 around PP_1344
Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 1,530,251 | + | -0.9 | |||
| 1,531,196 | + | -1.1 | |||
| 1,531,196 | + | -0.7 | |||
| 1,531,196 | + | -0.2 | |||
| 1,531,213 | + | -0.1 | |||
| 1,531,213 | + | -0.5 | |||
| 1,531,213 | + | +0.2 | |||
| 1,531,214 | - | -0.8 | |||
| 1,531,214 | - | -0.5 | |||
| 1,531,214 | - | -0.4 | |||
| 1,531,222 | - | -0.4 | |||
| 1,531,695 | - | PP_1344 | 0.71 | +0.4 | |
| 1,531,695 | - | PP_1344 | 0.71 | +0.8 | |
| 1,531,734 | + | PP_1344 | 0.77 | -0.5 | |
| 1,531,804 | + | PP_1344 | 0.89 | -0.8 | |
| 1,531,909 | + | -0.3 | |||
| 1,531,939 | + | +1.4 |
Or see this region's nucleotide sequence