Strain Fitness in Pseudomonas putida KT2440 around PP_0661

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0660 and PP_0661 are separated by 45 nucleotidesPP_0661 and PP_0662 are separated by 24 nucleotides PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362 _0660 PP_0661: PP_0661 - putative Transcriptional regulator AmpR, at 769,408 to 770,292 _0661 PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705 _0662 Position (kb) 769 770 771Strain fitness (log2 ratio) -2 -1 0 1 2 3at 768.710 kb on + strand, within PP_0660at 768.794 kb on - strand, within PP_0660at 768.860 kb on - strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.022 kb on - strand, within PP_0660at 769.058 kb on + strand, within PP_0660at 769.059 kb on - strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strandat 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.196 kb on + strand, within PP_0660at 769.197 kb on - strand, within PP_0660at 769.246 kb on + strandat 769.285 kb on + strandat 769.285 kb on + strandat 769.286 kb on - strandat 769.286 kb on - strandat 769.286 kb on - strandat 769.303 kb on + strandat 769.303 kb on + strandat 769.372 kb on - strandat 769.372 kb on - strandat 769.372 kb on - strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.506 kb on + strand, within PP_0661at 769.506 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.616 kb on - strand, within PP_0661at 769.638 kb on + strand, within PP_0661at 769.703 kb on + strand, within PP_0661at 769.789 kb on + strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.138 kb on + strand, within PP_0661at 770.290 kb on + strandat 770.291 kb on - strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.303 kb on + strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.323 kb on + strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.404 kb on + strandat 770.404 kb on + strandat 770.526 kb on + strand, within PP_0662at 770.555 kb on - strand, within PP_0662at 770.555 kb on - strand, within PP_0662at 770.805 kb on - strand, within PP_0662at 770.805 kb on - strand, within PP_0662at 770.806 kb on + strand, within PP_0662at 770.807 kb on - strand, within PP_0662at 770.807 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.094 kb on + strand, within PP_0662at 771.094 kb on + strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.196 kb on + strand, within PP_0662at 771.283 kb on + strand, within PP_0662at 771.283 kb on + strand, within PP_0662at 771.284 kb on - strand, within PP_0662at 771.284 kb on - strand, within PP_0662at 771.284 kb on - strand, within PP_0662

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
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768,710 + PP_0660 0.55 -1.3
768,794 - PP_0660 0.60 -1.1
768,860 - PP_0660 0.65 -0.6
769,021 + PP_0660 0.76 +0.9
769,021 + PP_0660 0.76 +0.2
769,021 + PP_0660 0.76 -1.1
769,021 + PP_0660 0.76 -0.6
769,022 - PP_0660 0.76 -0.3
769,058 + PP_0660 0.79 +0.3
769,059 - PP_0660 0.79 +0.9
769,108 + PP_0660 0.82 +0.5
769,108 + PP_0660 0.82 +1.0
769,108 + PP_0660 0.82 -0.3
769,108 + PP_0660 0.82 -0.2
769,108 + PP_0660 0.82 -0.2
769,108 + PP_0660 0.82 -0.4
769,108 + +3.0
769,109 - PP_0660 0.82 +1.0
769,109 - PP_0660 0.82 -0.7
769,109 - PP_0660 0.82 -0.3
769,109 - PP_0660 0.82 -0.4
769,196 + PP_0660 0.88 +0.1
769,197 - PP_0660 0.88 -0.1
769,246 + +1.0
769,285 + +3.4
769,285 + +0.3
769,286 - +1.4
769,286 - -0.3
769,286 - +0.4
769,303 + -0.4
769,303 + -0.0
769,372 - -0.5
769,372 - +0.5
769,372 - +0.3
769,374 + -0.0
769,374 + +0.3
769,374 + -0.1
769,374 + -0.9
769,374 + +0.1
769,506 + PP_0661 0.11 +0.5
769,506 + PP_0661 0.11 -0.9
769,615 + PP_0661 0.23 -1.2
769,615 + PP_0661 0.23 -0.3
769,615 + PP_0661 0.23 -1.8
769,616 - PP_0661 0.24 +0.1
769,638 + PP_0661 0.26 -0.7
769,703 + PP_0661 0.33 +0.3
769,789 + PP_0661 0.43 -1.1
769,790 - PP_0661 0.43 -1.1
769,790 - PP_0661 0.43 -1.9
770,012 - PP_0661 0.68 -1.3
770,012 - PP_0661 0.68 -0.3
770,138 + PP_0661 0.82 -0.0
770,290 + -1.3
770,291 - +0.8
770,295 + -1.9
770,295 + -0.7
770,295 + -0.5
770,295 + -0.2
770,295 + +0.8
770,295 + +0.6
770,295 + -0.4
770,295 + -2.4
770,296 - -0.7
770,296 - -0.9
770,296 - -0.8
770,299 + +0.5
770,299 + +0.5
770,299 + -0.1
770,299 + -1.8
770,300 - +0.6
770,300 - -0.0
770,300 - -1.0
770,300 - -0.5
770,300 - -1.2
770,300 - +0.5
770,300 - +0.9
770,300 - +0.1
770,303 + +0.7
770,304 - +0.2
770,304 - -0.6
770,304 - +0.3
770,323 + -0.8
770,324 - +0.6
770,324 - +0.7
770,324 - +1.2
770,324 - -0.3
770,404 + +0.9
770,404 + +0.1
770,526 + PP_0662 0.15 -0.3
770,555 - PP_0662 0.17 +0.5
770,555 - PP_0662 0.17 -0.7
770,805 - PP_0662 0.35 -0.2
770,805 - PP_0662 0.35 -1.4
770,806 + PP_0662 0.35 -0.4
770,807 - PP_0662 0.35 +0.4
770,807 - PP_0662 0.35 +0.3
771,014 - PP_0662 0.50 -0.7
771,014 - PP_0662 0.50 +0.3
771,014 - PP_0662 0.50 +0.7
771,014 - PP_0662 0.50 -0.6
771,014 - PP_0662 0.50 -0.4
771,094 + PP_0662 0.56 -0.3
771,094 + PP_0662 0.56 +0.6
771,095 - PP_0662 0.56 +0.7
771,095 - PP_0662 0.56 +0.0
771,095 - PP_0662 0.56 -0.4
771,196 + PP_0662 0.63 -1.0
771,283 + PP_0662 0.70 +0.3
771,283 + PP_0662 0.70 -0.3
771,284 - PP_0662 0.70 -1.5
771,284 - PP_0662 0.70 +1.3
771,284 - PP_0662 0.70 -0.6

Or see this region's nucleotide sequence