Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0207 and PP_0208 are separated by 15 nucleotides PP_0208 and PP_0209 overlap by 1 nucleotides PP_0209 and PP_0210 overlap by 4 nucleotides PP_0210 and PP_0211 overlap by 1 nucleotides
PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873
_0207
PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671
_0208
PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522
_0209
PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484
_0210
PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765
_0211
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.691 kb on + strand, within PP_0207 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.003 kb on + strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.004 kb on - strand, within PP_0208 at 260.011 kb on + strand, within PP_0208 at 260.012 kb on - strand, within PP_0208 at 260.012 kb on - strand, within PP_0208 at 260.097 kb on + strand, within PP_0208 at 260.098 kb on - strand, within PP_0208 at 260.098 kb on - strand, within PP_0208 at 260.108 kb on + strand, within PP_0208 at 260.109 kb on - strand, within PP_0208 at 260.176 kb on + strand, within PP_0208 at 260.177 kb on - strand, within PP_0208 at 260.409 kb on + strand, within PP_0208 at 260.409 kb on + strand, within PP_0208 at 260.410 kb on - strand, within PP_0208 at 260.461 kb on + strand, within PP_0208 at 260.461 kb on + strand, within PP_0208 at 260.461 kb on + strand, within PP_0208 at 260.462 kb on - strand, within PP_0208 at 260.462 kb on - strand, within PP_0208 at 260.462 kb on - strand, within PP_0208 at 260.520 kb on - strand, within PP_0208 at 260.522 kb on + strand, within PP_0208 at 260.522 kb on + strand, within PP_0208 at 260.522 kb on + strand, within PP_0208 at 260.523 kb on - strand, within PP_0208 at 260.523 kb on - strand, within PP_0208 at 260.523 kb on - strand, within PP_0208 at 260.537 kb on + strand, within PP_0208 at 260.537 kb on + strand, within PP_0208 at 260.537 kb on + strand, within PP_0208 at 260.538 kb on - strand, within PP_0208 at 260.649 kb on - strand at 260.680 kb on + strand at 260.700 kb on + strand at 260.964 kb on + strand, within PP_0209 at 260.965 kb on - strand, within PP_0209 at 261.229 kb on - strand, within PP_0209 at 261.229 kb on - strand, within PP_0209 at 261.411 kb on + strand, within PP_0209 at 261.411 kb on + strand, within PP_0209 at 261.411 kb on + strand, within PP_0209 at 261.412 kb on - strand, within PP_0209 at 261.518 kb on + strand at 261.518 kb on + strand at 261.519 kb on - strand at 261.781 kb on + strand, within PP_0210 at 261.781 kb on + strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.890 kb on - strand, within PP_0210 at 261.968 kb on - strand, within PP_0210 at 262.180 kb on + strand, within PP_0210 at 262.193 kb on - strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.288 kb on - strand, within PP_0210
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM remove 259,691 + PP_0207 0.87 +1.9 260,003 + PP_0208 0.15 -1.2 260,003 + PP_0208 0.15 -2.1 260,003 + PP_0208 0.15 -0.5 260,003 + PP_0208 0.15 -0.1 260,003 + PP_0208 0.15 -1.3 260,003 + PP_0208 0.15 -0.5 260,003 + PP_0208 0.15 +0.8 260,003 + PP_0208 0.15 -0.5 260,003 + PP_0208 0.15 -1.3 260,003 + PP_0208 0.15 -0.7 260,003 + PP_0208 0.15 +2.4 260,004 - PP_0208 0.15 -2.0 260,004 - PP_0208 0.15 -0.7 260,004 - PP_0208 0.15 +0.4 260,004 - PP_0208 0.15 +0.1 260,004 - PP_0208 0.15 -0.2 260,004 - PP_0208 0.15 -1.3 260,004 - PP_0208 0.15 -0.8 260,011 + PP_0208 0.16 +0.3 260,012 - PP_0208 0.16 -0.4 260,012 - PP_0208 0.16 -0.9 260,097 + PP_0208 0.27 -0.7 260,098 - PP_0208 0.27 +1.2 260,098 - PP_0208 0.27 +0.1 260,108 + PP_0208 0.28 -1.1 260,109 - PP_0208 0.28 -1.1 260,176 + PP_0208 0.37 +0.2 260,177 - PP_0208 0.37 -0.5 260,409 + PP_0208 0.66 +0.1 260,409 + PP_0208 0.66 +1.7 260,410 - PP_0208 0.67 -0.9 260,461 + PP_0208 0.73 +0.2 260,461 + PP_0208 0.73 +0.4 260,461 + PP_0208 0.73 -0.3 260,462 - PP_0208 0.73 -0.9 260,462 - PP_0208 0.73 +0.6 260,462 - PP_0208 0.73 -0.3 260,520 - PP_0208 0.81 +0.3 260,522 + PP_0208 0.81 -0.6 260,522 + PP_0208 0.81 -0.0 260,522 + PP_0208 0.81 -0.6 260,523 - PP_0208 0.81 -0.6 260,523 - PP_0208 0.81 -0.6 260,523 - PP_0208 0.81 +0.6 260,537 + PP_0208 0.83 +1.0 260,537 + PP_0208 0.83 -0.4 260,537 + PP_0208 0.83 +2.0 260,538 - PP_0208 0.83 -0.3 260,649 - +0.2 260,680 + -0.0 260,700 + -0.1 260,964 + PP_0209 0.34 -2.8 260,965 - PP_0209 0.35 -1.4 261,229 - PP_0209 0.65 +0.1 261,229 - PP_0209 0.65 -1.0 261,411 + PP_0209 0.87 -1.3 261,411 + PP_0209 0.87 -0.4 261,411 + PP_0209 0.87 -0.3 261,412 - PP_0209 0.87 -0.8 261,518 + -1.6 261,518 + -0.7 261,519 - -0.8 261,781 + PP_0210 0.27 +0.8 261,781 + PP_0210 0.27 -1.1 261,782 - PP_0210 0.27 +0.4 261,782 - PP_0210 0.27 -0.2 261,816 - PP_0210 0.31 -0.8 261,816 - PP_0210 0.31 -0.3 261,890 - PP_0210 0.38 +0.9 261,968 - PP_0210 0.46 -1.3 262,180 + PP_0210 0.68 +1.0 262,193 - PP_0210 0.70 -0.3 262,249 + PP_0210 0.76 +0.9 262,249 + PP_0210 0.76 +0.0 262,288 - PP_0210 0.80 -0.6
Or see this region's nucleotide sequence