Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0146 and PP_0147 are separated by 42 nucleotides PP_0147 and PP_0148 are separated by 264 nucleotides PP_0148 and PP_0149 are separated by 38 nucleotides
PP_0146: PP_0146 - putative transport protein, at 155,578 to 156,375
_0146
PP_0147: PP_0147 - Citrate transporter, at 156,418 to 157,725
_0147
PP_0148: PP_0148 - conserved protein of unknown function, at 157,990 to 158,394
_0148
PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388
_0149
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.427 kb on - strand at 155.531 kb on - strand at 155.531 kb on - strand at 155.702 kb on + strand, within PP_0146 at 155.702 kb on + strand, within PP_0146 at 155.702 kb on + strand, within PP_0146 at 155.708 kb on + strand, within PP_0146 at 155.708 kb on + strand, within PP_0146 at 155.708 kb on + strand, within PP_0146 at 155.708 kb on + strand, within PP_0146 at 155.708 kb on + strand, within PP_0146 at 155.709 kb on - strand, within PP_0146 at 155.709 kb on - strand, within PP_0146 at 155.709 kb on - strand, within PP_0146 at 155.749 kb on + strand, within PP_0146 at 155.749 kb on + strand, within PP_0146 at 155.750 kb on - strand, within PP_0146 at 155.754 kb on + strand, within PP_0146 at 155.885 kb on - strand, within PP_0146 at 155.966 kb on + strand, within PP_0146 at 155.966 kb on + strand, within PP_0146 at 155.966 kb on + strand, within PP_0146 at 155.966 kb on + strand, within PP_0146 at 155.967 kb on - strand, within PP_0146 at 155.967 kb on - strand, within PP_0146 at 155.967 kb on - strand at 155.967 kb on - strand, within PP_0146 at 156.001 kb on + strand, within PP_0146 at 156.001 kb on + strand, within PP_0146 at 156.001 kb on + strand, within PP_0146 at 156.002 kb on - strand, within PP_0146 at 156.032 kb on + strand, within PP_0146 at 156.032 kb on + strand, within PP_0146 at 156.033 kb on - strand, within PP_0146 at 156.033 kb on - strand, within PP_0146 at 156.033 kb on - strand, within PP_0146 at 156.033 kb on - strand, within PP_0146 at 156.153 kb on + strand, within PP_0146 at 156.153 kb on + strand, within PP_0146 at 156.174 kb on + strand, within PP_0146 at 156.175 kb on - strand, within PP_0146 at 156.175 kb on - strand, within PP_0146 at 156.300 kb on + strand at 156.351 kb on - strand at 156.355 kb on + strand at 156.368 kb on - strand at 156.408 kb on + strand at 156.409 kb on - strand at 156.416 kb on + strand at 156.417 kb on - strand at 156.417 kb on - strand at 156.417 kb on - strand at 156.417 kb on - strand at 156.419 kb on + strand at 156.419 kb on + strand at 156.419 kb on + strand at 156.419 kb on + strand at 156.420 kb on - strand at 156.420 kb on - strand at 156.426 kb on + strand at 156.427 kb on - strand at 156.469 kb on + strand at 156.469 kb on + strand at 156.470 kb on - strand at 156.470 kb on - strand at 156.481 kb on + strand at 156.481 kb on + strand at 156.481 kb on + strand at 156.481 kb on + strand at 156.482 kb on - strand at 156.554 kb on + strand, within PP_0147 at 156.554 kb on + strand, within PP_0147 at 156.554 kb on + strand, within PP_0147 at 156.554 kb on + strand, within PP_0147 at 156.555 kb on - strand, within PP_0147 at 156.639 kb on - strand, within PP_0147 at 156.677 kb on + strand, within PP_0147 at 156.678 kb on - strand, within PP_0147 at 156.680 kb on + strand, within PP_0147 at 156.680 kb on + strand, within PP_0147 at 156.681 kb on - strand, within PP_0147 at 156.746 kb on + strand, within PP_0147 at 156.747 kb on - strand, within PP_0147 at 156.747 kb on - strand, within PP_0147 at 156.868 kb on + strand, within PP_0147 at 156.868 kb on + strand, within PP_0147 at 156.868 kb on + strand, within PP_0147 at 156.868 kb on + strand, within PP_0147 at 156.920 kb on + strand, within PP_0147 at 156.920 kb on + strand, within PP_0147 at 156.920 kb on + strand, within PP_0147 at 156.921 kb on - strand, within PP_0147 at 156.921 kb on - strand, within PP_0147 at 156.921 kb on - strand, within PP_0147 at 157.028 kb on + strand, within PP_0147 at 157.028 kb on + strand, within PP_0147 at 157.029 kb on - strand, within PP_0147 at 157.029 kb on - strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.148 kb on + strand, within PP_0147 at 157.148 kb on + strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.172 kb on - strand, within PP_0147 at 157.201 kb on + strand, within PP_0147 at 157.223 kb on - strand, within PP_0147 at 157.340 kb on + strand at 157.340 kb on + strand, within PP_0147 at 157.340 kb on + strand, within PP_0147 at 157.341 kb on - strand, within PP_0147 at 157.341 kb on - strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.418 kb on - strand, within PP_0147 at 157.520 kb on + strand, within PP_0147 at 157.521 kb on - strand, within PP_0147 at 157.577 kb on - strand, within PP_0147 at 157.682 kb on + strand at 157.682 kb on + strand at 157.682 kb on + strand at 157.682 kb on + strand at 157.683 kb on - strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.732 kb on - strand at 157.817 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.922 kb on - strand at 157.936 kb on + strand at 157.936 kb on + strand at 157.936 kb on + strand at 157.987 kb on + strand at 157.987 kb on + strand at 157.988 kb on - strand at 158.004 kb on - strand at 158.004 kb on - strand at 158.175 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.203 kb on + strand, within PP_0148 at 158.251 kb on - strand, within PP_0148 at 158.304 kb on - strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.393 kb on - strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM remove 155,427 - -0.6 155,531 - +0.3 155,531 - -0.4 155,702 + PP_0146 0.16 -0.5 155,702 + PP_0146 0.16 -0.1 155,702 + PP_0146 0.16 -0.1 155,708 + PP_0146 0.16 +0.4 155,708 + PP_0146 0.16 -1.9 155,708 + PP_0146 0.16 +1.9 155,708 + PP_0146 0.16 -0.5 155,708 + PP_0146 0.16 -0.7 155,709 - PP_0146 0.16 -0.3 155,709 - PP_0146 0.16 +1.6 155,709 - PP_0146 0.16 +0.4 155,749 + PP_0146 0.21 -2.8 155,749 + PP_0146 0.21 -0.2 155,750 - PP_0146 0.22 -1.0 155,754 + PP_0146 0.22 +0.3 155,885 - PP_0146 0.38 -0.1 155,966 + PP_0146 0.49 -1.0 155,966 + PP_0146 0.49 -0.6 155,966 + PP_0146 0.49 -0.0 155,966 + PP_0146 0.49 +0.8 155,967 - PP_0146 0.49 +0.1 155,967 - PP_0146 0.49 +0.2 155,967 - +2.0 155,967 - PP_0146 0.49 -0.3 156,001 + PP_0146 0.53 +0.5 156,001 + PP_0146 0.53 -0.4 156,001 + PP_0146 0.53 +0.5 156,002 - PP_0146 0.53 +0.1 156,032 + PP_0146 0.57 +1.0 156,032 + PP_0146 0.57 +0.6 156,033 - PP_0146 0.57 +0.0 156,033 - PP_0146 0.57 +0.1 156,033 - PP_0146 0.57 +0.5 156,033 - PP_0146 0.57 -0.1 156,153 + PP_0146 0.72 +1.0 156,153 + PP_0146 0.72 -0.9 156,174 + PP_0146 0.75 +0.1 156,175 - PP_0146 0.75 -1.2 156,175 - PP_0146 0.75 +1.0 156,300 + +0.1 156,351 - +0.1 156,355 + +0.8 156,368 - -0.7 156,408 + +1.2 156,409 - -0.6 156,416 + -0.9 156,417 - -0.8 156,417 - +0.6 156,417 - +0.2 156,417 - -0.9 156,419 + +0.1 156,419 + +1.2 156,419 + -0.2 156,419 + -0.4 156,420 - +1.0 156,420 - -0.7 156,426 + -1.1 156,427 - -1.2 156,469 + -0.3 156,469 + -1.8 156,470 - -0.3 156,470 - +1.3 156,481 + -1.1 156,481 + -0.8 156,481 + -2.4 156,481 + -1.2 156,482 - -0.3 156,554 + PP_0147 0.10 -1.8 156,554 + PP_0147 0.10 -3.2 156,554 + PP_0147 0.10 -1.9 156,554 + PP_0147 0.10 -0.3 156,555 - PP_0147 0.10 -0.3 156,639 - PP_0147 0.17 +0.0 156,677 + PP_0147 0.20 -1.8 156,678 - PP_0147 0.20 -0.8 156,680 + PP_0147 0.20 -2.1 156,680 + PP_0147 0.20 -1.7 156,681 - PP_0147 0.20 -0.8 156,746 + PP_0147 0.25 -1.3 156,747 - PP_0147 0.25 -0.8 156,747 - PP_0147 0.25 -1.6 156,868 + PP_0147 0.34 -2.3 156,868 + PP_0147 0.34 -1.6 156,868 + PP_0147 0.34 -1.9 156,868 + PP_0147 0.34 -1.8 156,920 + PP_0147 0.38 -2.2 156,920 + PP_0147 0.38 -1.3 156,920 + PP_0147 0.38 -2.3 156,921 - PP_0147 0.38 -0.9 156,921 - PP_0147 0.38 -1.4 156,921 - PP_0147 0.38 -1.2 157,028 + PP_0147 0.47 -0.1 157,028 + PP_0147 0.47 -1.1 157,029 - PP_0147 0.47 -0.7 157,029 - PP_0147 0.47 +1.6 157,142 + PP_0147 0.55 -0.5 157,142 + PP_0147 0.55 -0.4 157,142 + PP_0147 0.55 +0.0 157,142 + PP_0147 0.55 +0.3 157,142 + PP_0147 0.55 -2.4 157,142 + PP_0147 0.55 -0.6 157,143 - PP_0147 0.55 -0.8 157,143 - PP_0147 0.55 -1.2 157,143 - PP_0147 0.55 -1.2 157,148 + PP_0147 0.56 -2.5 157,148 + PP_0147 0.56 +0.0 157,149 - PP_0147 0.56 -2.4 157,149 - PP_0147 0.56 -1.3 157,149 - PP_0147 0.56 -1.6 157,149 - PP_0147 0.56 -1.2 157,172 - PP_0147 0.58 -1.4 157,201 + PP_0147 0.60 -1.0 157,223 - PP_0147 0.62 -1.6 157,340 + +0.0 157,340 + PP_0147 0.70 -0.1 157,340 + PP_0147 0.70 -1.2 157,341 - PP_0147 0.71 -0.9 157,341 - PP_0147 0.71 +2.0 157,373 + PP_0147 0.73 -0.6 157,373 + PP_0147 0.73 +0.5 157,373 + PP_0147 0.73 -1.3 157,373 + PP_0147 0.73 -1.1 157,373 + PP_0147 0.73 -0.7 157,373 + PP_0147 0.73 -2.3 157,374 - PP_0147 0.73 -0.4 157,374 - PP_0147 0.73 -1.7 157,374 - PP_0147 0.73 +2.0 157,418 - PP_0147 0.76 -2.5 157,520 + PP_0147 0.84 -0.3 157,521 - PP_0147 0.84 +0.0 157,577 - PP_0147 0.89 -0.8 157,682 + -1.3 157,682 + -0.6 157,682 + -1.8 157,682 + -0.4 157,683 - -2.4 157,731 + -1.2 157,731 + -1.8 157,731 + -1.6 157,731 + -0.3 157,732 - -0.4 157,817 + -0.2 157,839 + -0.6 157,839 + -1.4 157,839 + -2.2 157,839 + -2.0 157,839 + -1.1 157,839 + -2.8 157,839 + -2.0 157,840 - -1.6 157,840 - -1.4 157,840 - -0.1 157,840 - +0.7 157,840 - -0.2 157,922 - -1.0 157,936 + -0.7 157,936 + -0.7 157,936 + -0.6 157,987 + -0.1 157,987 + +0.2 157,988 - -0.6 158,004 - +1.0 158,004 - +0.3 158,175 + PP_0148 0.46 -0.1 158,176 + PP_0148 0.46 -2.1 158,176 + PP_0148 0.46 +0.6 158,176 + PP_0148 0.46 -0.0 158,176 + PP_0148 0.46 -0.2 158,176 + PP_0148 0.46 +0.0 158,176 + PP_0148 0.46 +1.0 158,176 + PP_0148 0.46 +0.1 158,177 - PP_0148 0.46 +0.2 158,177 - PP_0148 0.46 +0.6 158,177 - PP_0148 0.46 -1.2 158,177 - PP_0148 0.46 +0.2 158,203 + PP_0148 0.53 -1.2 158,251 - PP_0148 0.64 -2.2 158,304 - PP_0148 0.78 +0.1 158,319 + PP_0148 0.81 -0.7 158,319 + +1.0 158,319 + PP_0148 0.81 -0.0 158,319 + PP_0148 0.81 -1.2 158,319 + PP_0148 0.81 -0.1 158,320 - PP_0148 0.81 +0.0 158,320 - PP_0148 0.81 -0.3 158,320 - PP_0148 0.81 -0.8 158,320 - PP_0148 0.81 +0.2 158,320 - PP_0148 0.81 -0.1 158,393 - +0.5 158,429 + -0.4 158,429 + +0.1 158,429 + -0.6 158,429 + -0.7 158,429 + -0.2 158,430 - +0.8 158,430 - -0.3 158,430 - -0.2 158,430 - -0.8 158,430 - -0.1 158,430 - +0.2 158,430 - -0.7 158,430 - -1.7 158,430 - +0.3 158,430 - +0.9 158,430 - +0.1
Or see this region's nucleotide sequence