Strain Fitness in Pseudomonas putida KT2440 around PP_5690

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
5,072,391	+		PP_5689	0.19	+2.1
5,072,422	-		PP_5689	0.25	+0.8
5,072,433	-		PP_5689	0.27	+0.0
5,072,480	-		PP_5689	0.35	-1.8
5,072,530	-		PP_5689	0.44	-0.4
5,072,569	+		PP_5689	0.51	+0.9
5,072,697	+		PP_5689	0.73	-0.9
5,072,698	-		PP_5689	0.73	+0.3
5,072,700	-		PP_5689	0.74	+1.1
5,072,700	-		PP_5689	0.74	+0.2
5,072,818	-				+0.2
5,072,851	-				-0.5
5,072,879	+				-2.2
5,072,940	+				-2.0
5,072,943	-				+0.2
5,073,003	-				+1.1
5,073,038	-				-0.7
5,073,087	-				+0.1
5,073,092	-				+0.6
5,073,186	+				+0.7
5,073,188	+				-0.8
5,073,188	+				-1.0
5,073,192	+				+0.5
5,073,293	-		PP_5690	0.16	+0.1
5,073,328	+		PP_5690	0.25	+0.2
5,073,336	-		PP_5690	0.27	-0.2
5,073,336	-		PP_5690	0.27	+0.1
5,073,464	-		PP_5690	0.60	-0.9
5,073,490	-		PP_5690	0.67	-2.9
5,073,502	+		PP_5690	0.70	-0.4
5,073,502	+		PP_5690	0.70	-1.4
5,073,506	+		PP_5690	0.71	-0.6
5,073,506	+		PP_5690	0.71	-0.5
5,073,506	+		PP_5690	0.71	-0.0
5,073,507	-		PP_5690	0.72	-1.7
5,073,507	-		PP_5690	0.72	-1.2
5,073,507	-		PP_5690	0.72	-0.2
5,073,601	+				-0.2
5,073,602	-				-2.2
5,073,737	+		PP_5691	0.14	-1.1
5,073,767	+		PP_5691	0.21	-0.2
5,073,767	+		PP_5691	0.21	-0.2
5,073,767	+		PP_5691	0.21	+1.1
5,073,767	+		PP_5691	0.21	+0.6
5,073,796	-		PP_5691	0.27	-0.0
5,073,837	+		PP_5691	0.36	-2.3
5,073,961	-		PP_5691	0.64	-0.4
5,074,008	-		PP_5691	0.74	+0.5
5,074,040	+		PP_5691	0.82	+0.3
5,074,040	+		PP_5691	0.82	-0.7
5,074,040	+		PP_5691	0.82	-1.0
5,074,040	+		PP_5691	0.82	+0.1
5,074,041	-		PP_5691	0.82	+0.2
5,074,041	-		PP_5691	0.82	-0.6
5,074,045	-		PP_5691	0.83	-0.2
5,074,045	-		PP_5691	0.83	+0.6
5,074,094	+				-0.7
5,074,113	-				-0.5
5,074,137	+				+0.7
5,074,138	-				-1.5
5,074,209	+				+2.1
5,074,209	+				+0.1
5,074,210	-				+1.3
5,074,236	-		PP_5692	0.17	+0.3
5,074,246	-		PP_5692	0.19	-0.1
5,074,281	+		PP_5692	0.28	+0.2
5,074,281	+		PP_5692	0.28	+1.1
5,074,281	+		PP_5692	0.28	-1.3
5,074,281	+		PP_5692	0.28	-1.4
5,074,282	-		PP_5692	0.28	-1.0
5,074,282	-		PP_5692	0.28	-0.2
5,074,282	-		PP_5692	0.28	+0.1
5,074,282	-		PP_5692	0.28	+0.5
5,074,282	-		PP_5692	0.28	-0.4
5,074,282	-		PP_5692	0.28	-0.7
5,074,282	-		PP_5692	0.28	-1.5
5,074,384	+		PP_5692	0.54	-0.1
5,074,385	-		PP_5692	0.54	+0.3
5,074,461	+		PP_5692	0.74	-0.9
5,074,461	+		PP_5692	0.74	+0.3
5,074,461	+		PP_5692	0.74	+2.7
5,074,462	-		PP_5692	0.74	+0.3
5,074,463	+		PP_5692	0.74	-0.6
5,074,464	-		PP_5692	0.75	-0.4
5,074,464	-		PP_5692	0.75	-0.5
5,074,464	-		PP_5692	0.75	-0.2
5,074,464	-		PP_5692	0.75	+0.0
5,074,492	-		PP_5692	0.82	+0.4
5,074,502	-		PP_5692	0.84	-0.0
5,074,615	+				-1.3