Strain Fitness in Pseudomonas putida KT2440 around PP_1182

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
1,355,838	+				-0.7
1,355,849	+				+0.7
1,355,849	+				+1.0
1,355,850	-				+2.1
1,355,850	-				-1.5
1,356,069	+				-0.5
1,356,069	+				+0.2
1,356,069	+				-1.2
1,356,069	+				-0.6
1,356,069	+				+0.8
1,356,069	+				+0.0
1,356,069	+				+0.2
1,356,069	+				+0.2
1,356,070	-				+0.4
1,356,070	-				-0.2
1,356,078	-				+1.7
1,356,078	-				+0.5
1,356,078	-				+0.5
1,356,194	+				+1.6
1,356,348	-		PP_1181	0.32	-0.5
1,356,428	+		PP_1181	0.43	-0.9
1,356,428	+		PP_1181	0.43	-0.5
1,356,429	-		PP_1181	0.43	+0.7
1,356,429	-		PP_1181	0.43	+0.6
1,356,429	-		PP_1181	0.43	+0.2
1,356,429	-		PP_1181	0.43	-0.4
1,356,429	-		PP_1181	0.43	+0.1
1,356,469	+		PP_1181	0.49	+0.1
1,356,469	+		PP_1181	0.49	+0.2
1,356,470	-		PP_1181	0.49	+0.4
1,356,470	-		PP_1181	0.49	+0.3
1,356,716	-		PP_1181	0.85	-0.5
1,356,797	+				-1.0
1,356,848	-				-0.3
1,357,108	+		PP_1182	0.18	-0.8
1,357,108	+		PP_1182	0.18	-0.2
1,357,108	+		PP_1182	0.18	-0.2
1,357,109	-		PP_1182	0.18	-0.2
1,357,109	-		PP_1182	0.18	+0.7
1,357,160	+		PP_1182	0.21	-1.1
1,357,160	+		PP_1182	0.21	+0.1
1,357,240	+		PP_1182	0.26	-1.2
1,357,241	-		PP_1182	0.26	-0.8
1,357,241	-		PP_1182	0.26	-0.6
1,357,241	-		PP_1182	0.26	-0.1
1,357,241	-		PP_1182	0.26	+0.1
1,357,241	-		PP_1182	0.26	-1.5
1,357,241	-		PP_1182	0.26	+1.0
1,357,244	+		PP_1182	0.26	-0.8
1,357,244	+		PP_1182	0.26	-1.6
1,357,245	-		PP_1182	0.26	-0.5
1,357,245	-		PP_1182	0.26	-0.0
1,357,245	-		PP_1182	0.26	-1.0
1,357,245	-		PP_1182	0.26	-0.8
1,357,347	+		PP_1182	0.33	+0.5
1,357,347	+		PP_1182	0.33	-0.6
1,357,347	+		PP_1182	0.33	+0.1
1,357,348	-		PP_1182	0.33	+0.1
1,357,348	-		PP_1182	0.33	-0.3
1,357,493	-		PP_1182	0.42	-0.7
1,357,570	+		PP_1182	0.47	+0.2
1,357,570	+		PP_1182	0.47	-0.4
1,357,852	-		PP_1182	0.64	+0.5
1,357,852	-		PP_1182	0.64	+0.3
1,357,878	+		PP_1182	0.66	-0.1
1,357,918	+		PP_1182	0.68	+0.5
1,357,919	-		PP_1182	0.68	-1.2
1,358,093	-		PP_1182	0.79	-0.9
1,358,164	+		PP_1182	0.84	+0.4
1,358,164	+		PP_1182	0.84	-0.2
1,358,164	+		PP_1182	0.84	-0.4
1,358,278	-				+0.9
1,358,278	-				-0.7
1,358,333	-				+0.3
1,358,425	+				+0.9
1,358,426	-				+0.1
1,359,139	+				+2.1
1,359,140	-				+0.4
1,359,215	+				-0.5
1,359,246	+				-1.8
1,359,246	+				-2.1
1,359,246	+				-1.5
1,359,247	-				-1.5
1,359,247	-				-1.6
1,359,247	-				+0.1
1,359,279	+				-0.1
1,359,280	-				+0.1
1,359,280	-				+0.0
1,359,281	+				-1.2
1,359,282	-				-0.2
1,359,363	+		PP_1184	0.19	-0.7
1,359,377	+		PP_1184	0.20	+0.3
1,359,378	-		PP_1184	0.21	-0.4
1,359,378	-		PP_1184	0.21	-0.5
1,359,408	+		PP_1184	0.24	+0.2
1,359,409	-		PP_1184	0.24	-2.4