Strain Fitness in Pseudomonas putida KT2440 around PP_0154

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0152 and PP_0153 are separated by 245 nucleotidesPP_0153 and PP_0154 are separated by 373 nucleotidesPP_0154 and PP_0155 are separated by 186 nucleotides PP_0152: PP_0152 - conserved exported protein of unknown function, at 161,125 to 161,505 _0152 PP_0153: PP_0153 - hypothetical protein, at 161,751 to 161,966 _0153 PP_0154: PP_0154 - Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data), at 162,340 to 163,833 _0154 PP_0155: PP_0155 - pyridine nucleotide transhydrogenase, beta subunit, at 164,020 to 165,456 _0155 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.351 kb on - strand, within PP_0152at 161.433 kb on + strand, within PP_0152at 161.434 kb on - strand, within PP_0152at 161.481 kb on - strandat 161.529 kb on + strandat 161.568 kb on + strandat 161.858 kb on + strand, within PP_0153at 161.858 kb on + strand, within PP_0153at 161.859 kb on - strand, within PP_0153at 161.957 kb on + strandat 161.958 kb on - strandat 161.958 kb on - strandat 161.997 kb on + strandat 161.998 kb on - strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.002 kb on - strandat 162.049 kb on - strandat 162.052 kb on + strandat 162.053 kb on - strandat 162.082 kb on + strandat 162.207 kb on - strandat 162.241 kb on - strandat 162.246 kb on + strandat 162.246 kb on + strandat 162.246 kb on + strandat 162.247 kb on - strandat 162.264 kb on - strandat 162.447 kb on - strandat 162.468 kb on - strandat 162.747 kb on - strand, within PP_0154at 162.751 kb on - strand, within PP_0154at 162.751 kb on - strand, within PP_0154at 162.751 kb on - strand, within PP_0154at 162.774 kb on + strand, within PP_0154at 162.796 kb on + strand, within PP_0154at 162.797 kb on - strand, within PP_0154at 162.797 kb on - strand, within PP_0154at 162.851 kb on + strand, within PP_0154at 162.852 kb on - strand, within PP_0154at 162.852 kb on - strand, within PP_0154at 162.852 kb on - strand, within PP_0154at 162.924 kb on + strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.925 kb on - strand, within PP_0154at 162.977 kb on + strand, within PP_0154at 162.977 kb on + strand, within PP_0154at 162.978 kb on - strand, within PP_0154at 162.978 kb on - strand, within PP_0154at 163.078 kb on - strand, within PP_0154at 163.195 kb on - strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.249 kb on + strand, within PP_0154at 163.286 kb on + strand, within PP_0154at 163.286 kb on + strand, within PP_0154at 163.287 kb on - strand, within PP_0154at 163.296 kb on + strand, within PP_0154at 163.296 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.298 kb on + strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.299 kb on - strand, within PP_0154at 163.519 kb on + strand, within PP_0154at 163.789 kb on + strandat 163.789 kb on + strandat 163.790 kb on - strandat 163.790 kb on - strandat 163.790 kb on - strandat 163.819 kb on - strandat 163.829 kb on + strandat 163.829 kb on + strandat 163.830 kb on - strandat 163.830 kb on - strandat 163.830 kb on - strandat 163.841 kb on + strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.842 kb on - strandat 163.861 kb on - strandat 163.861 kb on - strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.913 kb on + strandat 163.914 kb on - strandat 163.914 kb on - strandat 163.928 kb on - strandat 163.928 kb on - strandat 163.928 kb on - strandat 163.992 kb on + strandat 163.992 kb on + strandat 163.993 kb on - strandat 163.995 kb on - strandat 163.995 kb on - strandat 163.995 kb on - strandat 164.093 kb on + strandat 164.094 kb on - strandat 164.120 kb on + strandat 164.305 kb on + strand, within PP_0155at 164.306 kb on - strand, within PP_0155at 164.341 kb on + strand, within PP_0155at 164.341 kb on + strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.342 kb on - strand, within PP_0155at 164.361 kb on + strand, within PP_0155at 164.362 kb on - strand, within PP_0155at 164.362 kb on - strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.387 kb on + strand, within PP_0155at 164.455 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.648 kb on + strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.649 kb on - strand, within PP_0155at 164.675 kb on - strand, within PP_0155at 164.747 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155at 164.799 kb on + strand, within PP_0155

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
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161,351 - PP_0152 0.59 -2.1
161,433 + PP_0152 0.81 +0.4
161,434 - PP_0152 0.81 +0.1
161,481 - +0.9
161,529 + -0.6
161,568 + -0.7
161,858 + PP_0153 0.50 -1.3
161,858 + PP_0153 0.50 -0.2
161,859 - PP_0153 0.50 -1.1
161,957 + +0.2
161,958 - -0.2
161,958 - +0.5
161,997 + +1.4
161,998 - -0.4
162,001 + +1.3
162,001 + -0.2
162,002 - -1.2
162,049 - -0.1
162,052 + -0.6
162,053 - +0.9
162,082 + +0.9
162,207 - +1.3
162,241 - -0.4
162,246 + -0.5
162,246 + -0.1
162,246 + -0.5
162,247 - +0.6
162,264 - +0.9
162,447 - +2.1
162,468 - +0.1
162,747 - PP_0154 0.27 +1.3
162,751 - PP_0154 0.28 +0.1
162,751 - PP_0154 0.28 +0.1
162,751 - PP_0154 0.28 +0.1
162,774 + PP_0154 0.29 +0.9
162,796 + PP_0154 0.31 +3.1
162,797 - PP_0154 0.31 -0.0
162,797 - PP_0154 0.31 -0.1
162,851 + PP_0154 0.34 +0.1
162,852 - PP_0154 0.34 +2.1
162,852 - PP_0154 0.34 +2.4
162,852 - PP_0154 0.34 -2.0
162,924 + PP_0154 0.39 +1.5
162,925 - PP_0154 0.39 +0.7
162,925 - PP_0154 0.39 +2.1
162,925 - PP_0154 0.39 +1.2
162,925 - PP_0154 0.39 +2.1
162,925 - PP_0154 0.39 +0.7
162,925 - PP_0154 0.39 +2.6
162,925 - PP_0154 0.39 +0.1
162,977 + PP_0154 0.43 +2.4
162,977 + PP_0154 0.43 +0.3
162,978 - PP_0154 0.43 -0.1
162,978 - PP_0154 0.43 +2.1
163,078 - PP_0154 0.49 -1.2
163,195 - PP_0154 0.57 +1.7
163,249 + PP_0154 0.61 -1.2
163,249 + PP_0154 0.61 +3.4
163,249 + PP_0154 0.61 +0.3
163,286 + PP_0154 0.63 +2.4
163,286 + PP_0154 0.63 +1.0
163,287 - PP_0154 0.63 +0.5
163,296 + PP_0154 0.64 +0.4
163,296 + PP_0154 0.64 -0.9
163,298 + PP_0154 0.64 -0.3
163,298 + PP_0154 0.64 +0.1
163,298 + PP_0154 0.64 -0.1
163,298 + PP_0154 0.64 -0.2
163,298 + PP_0154 0.64 +1.8
163,298 + PP_0154 0.64 +2.1
163,298 + PP_0154 0.64 +0.3
163,298 + PP_0154 0.64 -0.5
163,298 + PP_0154 0.64 -0.0
163,298 + PP_0154 0.64 +1.4
163,298 + PP_0154 0.64 +1.1
163,298 + PP_0154 0.64 -0.3
163,298 + PP_0154 0.64 +2.1
163,298 + PP_0154 0.64 -0.9
163,298 + PP_0154 0.64 -1.1
163,299 - PP_0154 0.64 -1.3
163,299 - PP_0154 0.64 +0.5
163,299 - PP_0154 0.64 -1.1
163,299 - PP_0154 0.64 +1.1
163,299 - PP_0154 0.64 +1.4
163,299 - PP_0154 0.64 -0.3
163,299 - PP_0154 0.64 -1.2
163,299 - PP_0154 0.64 +0.1
163,299 - PP_0154 0.64 +0.5
163,299 - PP_0154 0.64 -0.9
163,299 - PP_0154 0.64 +0.3
163,299 - PP_0154 0.64 +0.6
163,299 - PP_0154 0.64 -1.2
163,299 - PP_0154 0.64 -1.2
163,299 - PP_0154 0.64 -0.5
163,299 - PP_0154 0.64 +0.5
163,299 - PP_0154 0.64 +2.1
163,299 - PP_0154 0.64 +2.1
163,299 - PP_0154 0.64 +0.5
163,299 - PP_0154 0.64 +1.5
163,299 - PP_0154 0.64 +1.5
163,299 - PP_0154 0.64 +1.1
163,299 - PP_0154 0.64 -0.5
163,299 - PP_0154 0.64 +0.9
163,519 + PP_0154 0.79 +1.0
163,789 + -0.9
163,789 + -1.1
163,790 - -0.7
163,790 - -1.3
163,790 - +1.5
163,819 - +1.1
163,829 + -0.2
163,829 + +0.2
163,830 - -1.2
163,830 - +1.3
163,830 - -0.2
163,841 + +0.1
163,842 - +2.1
163,842 - +2.1
163,842 - -0.7
163,842 - +0.9
163,861 - -0.3
163,861 - +0.7
163,913 + +1.2
163,913 + +1.1
163,913 + -0.2
163,913 + +0.5
163,914 - -0.2
163,914 - -0.8
163,928 - -0.3
163,928 - +0.2
163,928 - -0.4
163,992 + +0.9
163,992 + +2.3
163,993 - +0.4
163,995 - -0.4
163,995 - -0.3
163,995 - +0.4
164,093 + -0.6
164,094 - -0.9
164,120 + +1.7
164,305 + PP_0155 0.20 -0.9
164,306 - PP_0155 0.20 -0.3
164,341 + PP_0155 0.22 +1.3
164,341 + PP_0155 0.22 -0.6
164,342 - PP_0155 0.22 -0.2
164,342 - PP_0155 0.22 -1.0
164,342 - PP_0155 0.22 -2.3
164,342 - PP_0155 0.22 +0.6
164,361 + PP_0155 0.24 +0.3
164,362 - PP_0155 0.24 -1.2
164,362 - PP_0155 0.24 +0.4
164,387 + PP_0155 0.26 +0.4
164,387 + PP_0155 0.26 +0.3
164,387 + PP_0155 0.26 +0.4
164,387 + PP_0155 0.26 -0.7
164,455 + PP_0155 0.30 -0.2
164,648 + PP_0155 0.44 -0.1
164,648 + PP_0155 0.44 +0.0
164,648 + PP_0155 0.44 -0.1
164,649 - PP_0155 0.44 -0.7
164,649 - PP_0155 0.44 -0.9
164,649 - PP_0155 0.44 +0.3
164,675 - PP_0155 0.46 -0.1
164,747 + PP_0155 0.51 -0.9
164,799 + PP_0155 0.54 -0.0
164,799 + PP_0155 0.54 -0.0

Or see this region's nucleotide sequence