Strain Fitness in Pseudomonas putida KT2440 around PP_0139

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0138 and PP_0139 overlap by 19 nucleotidesPP_0139 and PP_0140 overlap by 4 nucleotidesPP_0140 and PP_0141 are separated by 3 nucleotides PP_0138: PP_0138 - conserved membrane protein of unknown function, at 146,243 to 147,472 _0138 PP_0139: PP_0139 - putative Lipoprotein, at 147,454 to 148,089 _0139 PP_0140: PP_0140 - conserved protein of unknown function, at 148,086 to 149,024 _0140 PP_0141: PP_0141 - putative ABC transporter, ATP-binding protein, at 149,028 to 149,819 _0141 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 146.585 kb on - strand, within PP_0138at 146.721 kb on - strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.862 kb on - strand, within PP_0138at 146.862 kb on - strandat 146.862 kb on - strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.083 kb on + strand, within PP_0138at 147.083 kb on + strand, within PP_0138at 147.170 kb on - strand, within PP_0138at 147.170 kb on - strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.359 kb on + strandat 147.455 kb on + strandat 147.571 kb on + strand, within PP_0139at 147.571 kb on + strand, within PP_0139at 147.660 kb on - strand, within PP_0139at 147.734 kb on + strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.775 kb on + strandat 147.857 kb on + strand, within PP_0139at 147.858 kb on - strand, within PP_0139at 148.126 kb on + strandat 148.268 kb on + strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.656 kb on - strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.995 kb on + strandat 148.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
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146,585 - PP_0138 0.28 -0.2
146,721 - PP_0138 0.39 +0.5
146,861 + PP_0138 0.50 +0.5
146,861 + PP_0138 0.50 +1.4
146,861 + PP_0138 0.50 -0.8
146,862 - PP_0138 0.50 -0.6
146,862 - -0.2
146,862 - PP_0138 0.50 +0.7
147,023 + PP_0138 0.63 +0.2
147,023 + PP_0138 0.63 -0.5
147,023 + PP_0138 0.63 +0.1
147,023 + PP_0138 0.63 -1.1
147,023 + PP_0138 0.63 +1.6
147,023 + PP_0138 0.63 +0.8
147,024 - PP_0138 0.63 -0.5
147,024 - PP_0138 0.63 +2.3
147,024 - PP_0138 0.63 -0.3
147,024 - PP_0138 0.63 +0.1
147,083 + PP_0138 0.68 +1.6
147,083 + PP_0138 0.68 -0.5
147,170 - PP_0138 0.75 +0.5
147,170 - PP_0138 0.75 +0.7
147,344 + PP_0138 0.90 -0.7
147,344 + PP_0138 0.90 -0.0
147,344 + PP_0138 0.90 -0.0
147,344 + PP_0138 0.90 +0.5
147,344 + PP_0138 0.90 -0.5
147,344 + PP_0138 0.90 +0.7
147,345 - PP_0138 0.90 -0.8
147,345 - PP_0138 0.90 +0.5
147,348 + PP_0138 0.90 -0.1
147,348 + PP_0138 0.90 +0.1
147,359 + -0.1
147,455 + -0.8
147,571 + PP_0139 0.18 +1.0
147,571 + PP_0139 0.18 -0.1
147,660 - PP_0139 0.32 -0.5
147,734 + PP_0139 0.44 -1.2
147,735 - PP_0139 0.44 -0.5
147,735 - PP_0139 0.44 -1.6
147,750 + PP_0139 0.47 -0.5
147,750 + PP_0139 0.47 -2.5
147,751 - PP_0139 0.47 -0.6
147,751 - PP_0139 0.47 -2.3
147,775 + -0.2
147,857 + PP_0139 0.63 -0.5
147,858 - PP_0139 0.64 -0.6
148,126 + +0.5
148,268 + PP_0140 0.19 -0.3
148,269 - PP_0140 0.19 -2.2
148,269 - PP_0140 0.19 -0.3
148,515 + PP_0140 0.46 -0.9
148,515 + PP_0140 0.46 +0.3
148,515 + PP_0140 0.46 +0.9
148,515 + PP_0140 0.46 -1.5
148,515 + PP_0140 0.46 -0.9
148,515 + PP_0140 0.46 +1.4
148,515 + PP_0140 0.46 -0.3
148,515 + PP_0140 0.46 -0.3
148,515 + PP_0140 0.46 +1.6
148,515 + PP_0140 0.46 +0.7
148,516 - PP_0140 0.46 -0.8
148,516 - PP_0140 0.46 -0.2
148,516 - PP_0140 0.46 -0.2
148,516 - PP_0140 0.46 +0.4
148,516 - PP_0140 0.46 -0.1
148,516 - PP_0140 0.46 +2.3
148,516 - PP_0140 0.46 -0.3
148,516 - PP_0140 0.46 -0.8
148,656 - PP_0140 0.61 +1.3
148,849 + PP_0140 0.81 -0.6
148,849 + PP_0140 0.81 +1.5
148,849 + PP_0140 0.81 +0.3
148,906 + PP_0140 0.87 -0.5
148,906 + PP_0140 0.87 -0.6
148,907 - PP_0140 0.87 -0.4
148,907 - PP_0140 0.87 -1.3
148,995 + +0.1
148,995 + +1.1

Or see this region's nucleotide sequence