Strain Fitness in Pseudomonas putida KT2440 around PP_2872

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
3,273,300	+				+0.5
3,273,301	-				+0.1
3,273,301	-				-0.2
3,273,342	-				-0.6
3,273,342	-				+0.0
3,273,342	-				+0.5
3,273,342	-				-0.4
3,273,417	+		PP_2871	0.12	-0.9
3,273,418	-		PP_2871	0.12	-0.6
3,273,418	-		PP_2871	0.12	-0.2
3,273,418	-		PP_2871	0.12	-0.7
3,273,418	-		PP_2871	0.12	+0.4
3,273,719	-		PP_2871	0.52	-0.6
3,273,862	+		PP_2871	0.71	-0.8
3,273,862	+		PP_2871	0.71	+1.1
3,273,862	+		PP_2871	0.71	-0.9
3,273,862	+		PP_2871	0.71	+0.2
3,273,862	+		PP_2871	0.71	+0.0
3,273,863	-		PP_2871	0.71	-0.5
3,273,863	-		PP_2871	0.71	-1.2
3,273,863	-		PP_2871	0.71	+1.2
3,273,865	+		PP_2871	0.71	+0.9
3,273,865	+		PP_2871	0.71	+0.4
3,273,866	-		PP_2871	0.72	-1.6
3,273,866	-		PP_2871	0.72	-0.3
3,273,866	-		PP_2871	0.72	+0.5
3,273,920	+		PP_2871	0.79	+0.1
3,273,920	+		PP_2871	0.79	-0.3
3,273,920	+		PP_2871	0.79	-0.5
3,273,921	-		PP_2871	0.79	+0.3
3,273,921	-		PP_2871	0.79	+0.6
3,274,069	+				+0.1
3,274,105	+				-0.2
3,274,106	-				+0.1
3,274,106	-				+0.3
3,274,146	-				+0.1
3,274,483	+		PP_2872	0.27	+0.1
3,274,483	+		PP_2872	0.27	-0.2
3,274,483	+		PP_2872	0.27	-0.5
3,274,483	+		PP_2872	0.27	-0.5
3,274,483	+		PP_2872	0.27	+0.5
3,274,484	-		PP_2872	0.27	-1.7
3,274,484	-		PP_2872	0.27	-0.3
3,274,484	-		PP_2872	0.27	-1.1
3,274,720	-		PP_2872	0.54	-1.3
3,274,848	+		PP_2872	0.68	-1.4
3,274,848	+		PP_2872	0.68	-0.4
3,274,849	-		PP_2872	0.68	-0.5
3,274,849	-		PP_2872	0.68	-0.7
3,274,879	+		PP_2872	0.72	-1.6
3,274,879	+		PP_2872	0.72	+0.1
3,274,880	-		PP_2872	0.72	+0.5
3,274,880	-		PP_2872	0.72	-0.4
3,275,082	-				+0.5
3,275,082	-				-0.3
3,275,134	+				-0.5
3,275,134	+				-0.3
3,275,135	-				-0.5
3,275,159	-				+0.2
3,275,246	+		PP_2873	0.15	+0.2
3,275,246	+		PP_2873	0.15	-0.5
3,275,285	+		PP_2873	0.27	+0.9
3,275,286	-		PP_2873	0.27	+1.5
3,275,286	-		PP_2873	0.27	-0.2
3,275,286	-		PP_2873	0.27	-0.2
3,275,464	-		PP_2873	0.83	+0.1
3,275,484	+		PP_2873	0.89	-1.0
3,275,484	+		PP_2873	0.89	+0.4
3,275,516	+				-0.1
3,275,516	+				-0.7
3,275,517	-				-0.1
3,275,913	+				+0.1
3,275,913	+				+0.0
3,276,014	+				+0.3
3,276,014	+				+0.2