Strain Fitness in Pseudomonas putida KT2440 around PP_2839

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
3,241,118	+		PP_2838	0.49	-0.4
3,241,119	-		PP_2838	0.49	-0.1
3,241,335	+		PP_2838	0.62	-0.3
3,241,336	-		PP_2838	0.62	-0.5
3,241,336	-		PP_2838	0.62	-0.3
3,241,336	-		PP_2838	0.62	-0.0
3,241,425	-		PP_2838	0.68	-0.3
3,241,606	+		PP_2838	0.79	-0.4
3,241,634	+		PP_2838	0.81	-0.5
3,241,634	+		PP_2838	0.81	-0.3
3,241,634	+		PP_2838	0.81	-0.2
3,241,634	+		PP_2838	0.81	+1.0
3,241,635	-		PP_2838	0.81	+0.3
3,241,635	-		PP_2838	0.81	-1.0
3,241,635	-		PP_2838	0.81	-0.8
3,241,957	+				-0.0
3,241,957	+				+0.4
3,241,957	+				-0.2
3,241,958	-				+0.2
3,241,958	-				+0.6
3,242,093	-				-0.5
3,242,263	+		PP_2839	0.15	+1.3
3,242,263	+		PP_2839	0.15	+0.2
3,242,264	-		PP_2839	0.15	+0.4
3,242,351	+		PP_2839	0.19	-0.9
3,242,352	-		PP_2839	0.19	+0.9
3,242,533	+		PP_2839	0.27	+0.3
3,242,533	+		PP_2839	0.27	+0.6
3,242,533	+		PP_2839	0.27	-1.0
3,242,534	-		PP_2839	0.27	+0.4
3,242,601	+		PP_2839	0.30	-0.4
3,242,601	+		PP_2839	0.30	+0.6
3,242,602	-		PP_2839	0.30	+2.2
3,242,602	-		PP_2839	0.30	-2.0
3,242,830	+		PP_2839	0.40	+1.1
3,242,929	+		PP_2839	0.44	+0.5
3,242,933	-		PP_2839	0.44	+0.2
3,242,933	-		PP_2839	0.44	+0.1
3,242,980	+		PP_2839	0.46	+0.6
3,242,986	+		PP_2839	0.46	-0.9
3,242,986	+		PP_2839	0.46	+0.7
3,242,986	+		PP_2839	0.46	-0.1
3,242,986	+		PP_2839	0.46	-1.7
3,242,987	-				+1.2
3,242,987	-		PP_2839	0.46	-0.3
3,242,989	+		PP_2839	0.47	+0.8
3,242,990	-				+1.2
3,242,990	-		PP_2839	0.47	-0.3
3,243,097	+		PP_2839	0.51	+0.1
3,243,097	+		PP_2839	0.51	+0.6
3,243,097	+		PP_2839	0.51	+0.1
3,243,098	-		PP_2839	0.51	-0.5
3,243,098	-		PP_2839	0.51	+0.4
3,243,098	-		PP_2839	0.51	+0.7
3,243,202	+		PP_2839	0.56	-0.6
3,243,204	+		PP_2839	0.56	-0.8
3,243,550	+		PP_2839	0.71	+0.0
3,243,550	+		PP_2839	0.71	-0.3
3,243,659	-		PP_2839	0.76	+1.4
3,243,713	-		PP_2839	0.78	-0.7
3,243,733	+		PP_2839	0.79	+0.2
3,243,733	+		PP_2839	0.79	-1.0
3,243,733	+		PP_2839	0.79	+0.5
3,243,733	+		PP_2839	0.79	-0.6
3,243,734	-		PP_2839	0.79	+0.1
3,243,734	-		PP_2839	0.79	-1.0
3,243,903	-		PP_2839	0.86	-0.1
3,244,058	-				-0.2
3,244,130	+				-0.1
3,244,359	+				-0.3
3,244,622	-		PP_2840	0.26	+0.1
3,244,666	-		PP_2840	0.30	-0.8
3,244,695	-		PP_2840	0.32	-0.7
3,244,821	-		PP_2840	0.43	-0.4
3,244,914	-		PP_2840	0.51	-1.5
3,244,914	-		PP_2840	0.51	+0.3
3,244,931	+		PP_2840	0.52	-1.0
3,244,970	+		PP_2840	0.56	+1.2
3,244,971	-		PP_2840	0.56	-0.3
3,245,159	-		PP_2840	0.72	-1.6