Strain Fitness in Pseudomonas putida KT2440 around PP_5700

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
5,236,227	+		PP_4613	0.67	-2.3
5,236,227	+		PP_4613	0.67	-1.6
5,236,227	+		PP_4613	0.67	+0.2
5,236,227	+		PP_4613	0.67	-0.9
5,236,227	+		PP_4613	0.67	+0.2
5,236,227	+		PP_4613	0.67	+0.2
5,236,228	-		PP_4613	0.67	-0.4
5,236,260	+		PP_4613	0.69	+0.8
5,236,260	+		PP_4613	0.69	-0.5
5,236,260	+		PP_4613	0.69	-0.9
5,236,260	+		PP_4613	0.69	-1.1
5,236,260	+		PP_4613	0.69	-2.3
5,236,260	+		PP_4613	0.69	-1.8
5,236,261	-		PP_4613	0.69	-1.4
5,236,261	-		PP_4613	0.69	-1.9
5,236,261	-		PP_4613	0.69	-1.1
5,236,261	-		PP_4613	0.69	-0.4
5,236,261	-		PP_4613	0.69	-1.4
5,236,323	+		PP_4613	0.71	-0.3
5,236,539	+		PP_4613	0.81	-1.3
5,236,540	-		PP_4613	0.81	-2.5
5,236,593	+		PP_4613	0.83	-0.7
5,236,593	+		PP_4613	0.83	+0.3
5,236,593	+		PP_4613	0.83	-0.3
5,236,594	-		PP_4613	0.83	-2.2
5,236,594	-		PP_4613	0.83	+0.5
5,236,594	-		PP_4613	0.83	-1.0
5,236,743	+		PP_4613	0.89	-0.3
5,236,743	+		PP_4613	0.89	-0.2
5,236,806	+				+0.7
5,236,807	-				-1.6
5,236,807	-				+0.2
5,236,807	-				-0.4
5,236,902	+				+0.3
5,236,905	+				-2.0
5,236,905	+				-2.6
5,236,905	+				-0.2
5,236,906	-				+1.2
5,236,918	-				+0.2
5,236,918	-				-1.4
5,236,918	-				+0.4
5,236,918	-				+0.6
5,236,941	+				+0.0
5,236,941	+				+0.2
5,236,941	+				-0.0
5,236,942	-				-0.0
5,236,942	-				-0.9
5,236,958	+				-1.5
5,236,958	+				+0.1
5,236,958	+				-1.6
5,236,958	+				-2.6
5,236,959	-				-2.6
5,236,959	-				+1.0
5,236,959	-				+0.5
5,236,965	+				-0.5
5,236,966	-				-1.2
5,237,017	+				-1.0
5,237,018	-				-0.2
5,237,088	-				-1.4
5,237,932	+				-0.8
5,237,932	+				+2.5
5,237,933	-				-1.3
5,237,992	+		PP_4615	0.13	+0.5
5,238,001	+		PP_4615	0.15	-0.8
5,238,001	+		PP_4615	0.15	-0.7
5,238,052	+		PP_4615	0.26	-0.3
5,238,052	+		PP_4615	0.26	-0.8
5,238,130	+		PP_4615	0.42	-0.3
5,238,130	+		PP_4615	0.42	+0.7
5,238,130	+		PP_4615	0.42	-0.8
5,238,130	+		PP_4615	0.42	+0.7
5,238,131	-		PP_4615	0.42	+0.0
5,238,169	+		PP_4615	0.51	+0.2
5,238,170	-		PP_4615	0.51	-2.8
5,238,170	-		PP_4615	0.51	-0.6
5,238,170	-		PP_4615	0.51	+0.2
5,238,170	-		PP_4615	0.51	+0.7
5,238,199	+		PP_4615	0.57	-0.3
5,238,199	+		PP_4615	0.57	-0.7
5,238,200	-		PP_4615	0.57	+0.4
5,238,314	-		PP_4615	0.81	+0.1
5,238,314	-		PP_4615	0.81	-1.1
5,238,419	+				+0.8
5,238,427	+				+0.0
5,238,427	+				+0.4
5,238,469	+				-0.9