Strain Fitness in Pseudomonas putida KT2440 around PP_4906

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
5,575,353	-				+0.4
5,575,499	+		PP_4905	0.24	+0.7
5,575,500	-		PP_4905	0.24	+0.1
5,575,512	+		PP_4905	0.25	+0.3
5,575,525	-		PP_4905	0.27	-0.1
5,575,543	+		PP_4905	0.29	+0.6
5,575,543	+		PP_4905	0.29	+0.6
5,575,543	+		PP_4905	0.29	-0.3
5,575,543	+		PP_4905	0.29	+1.5
5,575,544	-		PP_4905	0.29	-0.1
5,575,544	-		PP_4905	0.29	-0.0
5,575,638	+				+0.2
5,575,766	+		PP_4905	0.55	-0.2
5,575,815	-		PP_4905	0.61	-0.5
5,575,929	-		PP_4905	0.74	-0.7
5,576,120	-				+1.0
5,576,142	+				-0.4
5,576,142	+				+0.9
5,576,142	+				+1.7
5,576,148	+				+0.1
5,576,148	+				-1.4
5,576,148	+				+0.1
5,576,149	-				+0.2
5,576,149	-				+0.3
5,576,149	-				-1.1
5,576,180	+				-0.5
5,576,196	+				+0.4
5,576,197	-				-0.5
5,576,211	-				-0.5
5,576,211	-				-2.0
5,576,211	-				-0.3
5,576,214	+				+0.5
5,576,215	-				-0.3
5,576,236	+				-0.5
5,576,236	+				-0.4
5,576,236	+				-0.9
5,576,237	-				+0.3
5,576,237	-				+1.6
5,576,239	-				-0.1
5,576,239	-				-0.7
5,576,322	+				+0.0
5,576,322	+				+0.4
5,576,379	-				+0.9
5,576,379	-				-0.1
5,576,379	-				-0.9
5,576,379	-				+0.3
5,576,620	-		PP_4906	0.22	-1.1
5,576,883	-		PP_4906	0.39	-0.4
5,576,883	-		PP_4906	0.39	-1.5
5,577,054	+		PP_4906	0.50	+0.9
5,577,054	+		PP_4906	0.50	-0.6
5,577,054	+		PP_4906	0.50	+0.8
5,577,126	+		PP_4906	0.55	+0.0
5,577,126	+		PP_4906	0.55	-1.2
5,577,126	+		PP_4906	0.55	-2.1
5,577,126	+		PP_4906	0.55	-0.5
5,577,127	-		PP_4906	0.55	-1.7
5,577,166	-		PP_4906	0.58	-0.6
5,577,468	-		PP_4906	0.77	+0.3
5,577,528	+		PP_4906	0.81	+1.5
5,577,529	-		PP_4906	0.81	-2.6
5,577,657	+		PP_4906	0.90	-3.3
5,577,657	+		PP_4906	0.90	-0.2
5,577,658	-		PP_4906	0.90	-1.7
5,577,658	-		PP_4906	0.90	+0.1
5,577,660	+		PP_4906	0.90	-0.9
5,577,660	+		PP_4906	0.90	-0.6
5,577,660	+		PP_4906	0.90	+0.7
5,577,660	+		PP_4906	0.90	+0.0
5,577,661	-				-0.2
5,577,661	-				-0.6
5,577,661	-				-0.6
5,577,661	-				-0.2
5,577,796	+				+0.4
5,577,797	-				-0.6
5,577,824	+				+0.1
5,578,108	+		PP_4907	0.31	+1.9
5,578,108	+		PP_4907	0.31	-0.8
5,578,108	+		PP_4907	0.31	-0.4
5,578,108	+		PP_4907	0.31	+0.5
5,578,117	+		PP_4907	0.32	-0.1
5,578,186	+		PP_4907	0.40	+0.4
5,578,186	+		PP_4907	0.40	-1.1
5,578,186	+		PP_4907	0.40	-0.3
5,578,192	+		PP_4907	0.41	-0.3
5,578,192	+		PP_4907	0.41	+0.5
5,578,280	+		PP_4907	0.52	+0.8
5,578,570	+		PP_4907	0.88	-0.7
5,578,570	+		PP_4907	0.88	+0.1
5,578,612	+				+0.3