Strain Fitness in Pseudomonas putida KT2440 around PP_4765

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
5,424,588	+		PP_4764	0.20	-3.3
5,424,589	-		PP_4764	0.20	-0.2
5,424,600	+		PP_4764	0.22	+0.6
5,424,600	+		PP_4764	0.22	-0.2
5,424,601	-		PP_4764	0.22	+0.5
5,424,772	-		PP_4764	0.40	+0.8
5,425,023	+		PP_4764	0.68	+0.6
5,425,023	+		PP_4764	0.68	-1.1
5,425,023	+		PP_4764	0.68	+0.0
5,425,024	-		PP_4764	0.68	+1.0
5,425,024	-		PP_4764	0.68	+0.0
5,425,053	+		PP_4764	0.71	+0.3
5,425,053	+		PP_4764	0.71	-0.1
5,425,053	+		PP_4764	0.71	+0.3
5,425,068	+		PP_4764	0.73	+1.5
5,425,069	-		PP_4764	0.73	-0.7
5,425,089	+		PP_4764	0.75	+0.6
5,425,090	-		PP_4764	0.75	-0.8
5,425,090	-		PP_4764	0.75	+0.0
5,425,234	-				+0.5
5,425,300	+				+0.2
5,425,300	+				+0.1
5,425,300	+				+0.6
5,425,300	+				+0.2
5,425,301	-				-2.9
5,425,301	-				+0.3
5,425,358	-				-0.1
5,425,675	+		PP_4765	0.17	+1.5
5,425,675	+		PP_4765	0.17	+1.3
5,425,675	+		PP_4765	0.17	+0.0
5,425,675	+		PP_4765	0.17	-0.1
5,425,676	-		PP_4765	0.17	-0.0
5,425,676	-		PP_4765	0.17	-0.2
5,425,709	+		PP_4765	0.20	+0.9
5,425,709	+		PP_4765	0.20	+0.2
5,425,859	+		PP_4765	0.32	+0.5
5,425,860	-		PP_4765	0.32	+0.9
5,425,864	-		PP_4765	0.32	-0.2
5,426,044	-		PP_4765	0.47	+0.3
5,426,044	-		PP_4765	0.47	+0.3
5,426,100	-		PP_4765	0.51	+0.5
5,426,218	+		PP_4765	0.61	-0.8
5,426,218	+		PP_4765	0.61	-0.1
5,426,218	+		PP_4765	0.61	+0.5
5,426,218	+		PP_4765	0.61	-1.1
5,426,218	+		PP_4765	0.61	-0.4
5,426,218	+		PP_4765	0.61	-0.5
5,426,218	+		PP_4765	0.61	+0.2
5,426,218	+		PP_4765	0.61	+0.1
5,426,219	-		PP_4765	0.61	+1.4
5,426,219	-		PP_4765	0.61	-0.5
5,426,219	-		PP_4765	0.61	+1.6
5,426,219	-		PP_4765	0.61	-0.1
5,426,486	+		PP_4765	0.82	+0.9
5,426,486	+		PP_4765	0.82	+0.5
5,426,780	-				-0.1
5,426,819	+				-0.5
5,426,819	+				+0.1
5,426,819	+				-0.3
5,426,819	+				+0.6
5,426,820	-				+0.5
5,426,932	+		PP_4766	0.12	+0.2
5,427,121	-				-0.1
5,427,121	-		PP_4766	0.26	-0.6
5,427,121	-		PP_4766	0.26	-1.7
5,427,121	-		PP_4766	0.26	-2.1
5,427,176	-		PP_4766	0.30	-0.4
5,427,484	+		PP_4766	0.54	+0.6
5,427,586	-		PP_4766	0.61	+0.6