Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4634 and PP_4635 are separated by 143 nucleotides PP_4635 and PP_4636 are separated by 302 nucleotides
PP_4634: PP_4634 - putative hydrolase, alpha/beta fold family, at 5,256,893 to 5,257,801
_4634
PP_4635: PP_4635 - trans-2-enoyl-CoA reductase (NAD(+)), at 5,257,945 to 5,259,156
_4635
PP_4636: PP_4636 - acetyl-CoA acetyltransferase, at 5,259,459 to 5,260,637
_4636
Position (kb) 5257
5258
5259
5260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5257.067 kb on + strand, within PP_4634 at 5257.067 kb on + strand, within PP_4634 at 5257.068 kb on - strand, within PP_4634 at 5257.068 kb on - strand, within PP_4634 at 5257.072 kb on - strand, within PP_4634 at 5257.164 kb on - strand, within PP_4634 at 5257.211 kb on - strand, within PP_4634 at 5257.356 kb on + strand, within PP_4634 at 5257.356 kb on + strand, within PP_4634 at 5257.356 kb on + strand, within PP_4634 at 5257.356 kb on + strand, within PP_4634 at 5257.356 kb on + strand, within PP_4634 at 5257.357 kb on - strand, within PP_4634 at 5257.357 kb on - strand, within PP_4634 at 5257.359 kb on + strand, within PP_4634 at 5257.359 kb on + strand, within PP_4634 at 5257.360 kb on - strand, within PP_4634 at 5257.430 kb on + strand, within PP_4634 at 5257.431 kb on - strand, within PP_4634 at 5257.594 kb on - strand, within PP_4634 at 5257.594 kb on - strand, within PP_4634 at 5257.594 kb on - strand, within PP_4634 at 5257.599 kb on + strand, within PP_4634 at 5257.599 kb on + strand, within PP_4634 at 5257.599 kb on + strand at 5257.599 kb on + strand, within PP_4634 at 5257.599 kb on + strand, within PP_4634 at 5257.599 kb on + strand, within PP_4634 at 5257.600 kb on - strand, within PP_4634 at 5257.633 kb on - strand, within PP_4634 at 5257.651 kb on - strand, within PP_4634 at 5257.746 kb on + strand at 5257.796 kb on - strand at 5257.796 kb on - strand at 5257.796 kb on - strand at 5257.833 kb on - strand at 5257.854 kb on - strand at 5257.883 kb on + strand at 5257.883 kb on + strand at 5257.939 kb on - strand at 5257.947 kb on - strand at 5259.178 kb on - strand at 5259.230 kb on - strand at 5259.253 kb on + strand at 5259.253 kb on + strand at 5259.253 kb on + strand at 5259.254 kb on - strand at 5259.254 kb on - strand at 5259.254 kb on - strand at 5259.339 kb on - strand at 5259.404 kb on - strand at 5259.432 kb on + strand at 5259.826 kb on - strand, within PP_4636 at 5259.826 kb on - strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.922 kb on - strand, within PP_4636 at 5259.922 kb on - strand, within PP_4636 at 5259.961 kb on - strand, within PP_4636 at 5259.962 kb on - strand, within PP_4636
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM remove 5,257,067 + PP_4634 0.19 -0.1 5,257,067 + PP_4634 0.19 +0.2 5,257,068 - PP_4634 0.19 -0.1 5,257,068 - PP_4634 0.19 -0.1 5,257,072 - PP_4634 0.20 -1.6 5,257,164 - PP_4634 0.30 +1.1 5,257,211 - PP_4634 0.35 +0.8 5,257,356 + PP_4634 0.51 +0.8 5,257,356 + PP_4634 0.51 -0.4 5,257,356 + PP_4634 0.51 +0.4 5,257,356 + PP_4634 0.51 -0.6 5,257,356 + PP_4634 0.51 +0.2 5,257,357 - PP_4634 0.51 -0.1 5,257,357 - PP_4634 0.51 -0.1 5,257,359 + PP_4634 0.51 -0.2 5,257,359 + PP_4634 0.51 -0.2 5,257,360 - PP_4634 0.51 -0.5 5,257,430 + PP_4634 0.59 -0.1 5,257,431 - PP_4634 0.59 +1.2 5,257,594 - PP_4634 0.77 -0.9 5,257,594 - PP_4634 0.77 -0.2 5,257,594 - PP_4634 0.77 +0.9 5,257,599 + PP_4634 0.78 -0.0 5,257,599 + PP_4634 0.78 -1.6 5,257,599 + +2.5 5,257,599 + PP_4634 0.78 +1.0 5,257,599 + PP_4634 0.78 +0.4 5,257,599 + PP_4634 0.78 +0.3 5,257,600 - PP_4634 0.78 +0.3 5,257,633 - PP_4634 0.81 -0.5 5,257,651 - PP_4634 0.83 -1.1 5,257,746 + -2.4 5,257,796 - -0.4 5,257,796 - -0.6 5,257,796 - +0.1 5,257,833 - -0.3 5,257,854 - +0.3 5,257,883 + +1.2 5,257,883 + -0.7 5,257,939 - -0.1 5,257,947 - +1.1 5,259,178 - +1.3 5,259,230 - +1.1 5,259,253 + +0.2 5,259,253 + +0.9 5,259,253 + +2.5 5,259,254 - +0.8 5,259,254 - -0.5 5,259,254 - -0.4 5,259,339 - -0.1 5,259,404 - +0.0 5,259,432 + +0.9 5,259,826 - PP_4636 0.31 -0.0 5,259,826 - PP_4636 0.31 +0.1 5,259,921 + PP_4636 0.39 -1.0 5,259,921 + PP_4636 0.39 -0.9 5,259,921 + PP_4636 0.39 +0.0 5,259,922 - PP_4636 0.39 +0.0 5,259,922 - PP_4636 0.39 +0.0 5,259,961 - PP_4636 0.43 +0.4 5,259,962 - PP_4636 0.43 -1.2
Or see this region's nucleotide sequence