Strain Fitness in Pseudomonas putida KT2440 around PP_4105

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
4,638,875	+				+0.8
4,638,922	-				+0.3
4,639,070	+				-1.1
4,639,071	-				+0.8
4,639,191	+		PP_4104	0.16	-1.6
4,639,192	-		PP_4104	0.16	+0.9
4,639,192	-		PP_4104	0.16	+0.1
4,639,245	+		PP_4104	0.23	+1.2
4,639,245	+		PP_4104	0.23	-0.5
4,639,246	-		PP_4104	0.24	-0.8
4,639,246	-		PP_4104	0.24	+0.2
4,639,320	+		PP_4104	0.34	-0.1
4,639,320	+		PP_4104	0.34	+0.3
4,639,348	-		PP_4104	0.38	-0.7
4,639,348	-		PP_4104	0.38	-0.1
4,639,491	+		PP_4104	0.59	-0.7
4,639,707	+		PP_4104	0.90	+0.5
4,639,812	+				+0.0
4,639,812	+				+0.1
4,639,943	+		PP_4105	0.16	-0.4
4,639,943	+		PP_4105	0.16	-1.1
4,639,943	+		PP_4105	0.16	+0.6
4,639,944	-		PP_4105	0.16	-0.7
4,639,944	-		PP_4105	0.16	-0.5
4,639,944	-		PP_4105	0.16	-1.1
4,640,038	+		PP_4105	0.35	-0.7
4,640,117	-		PP_4105	0.51	-0.6
4,640,128	-				+0.2
4,640,184	+		PP_4105	0.64	-0.7
4,640,185	-		PP_4105	0.64	+0.0
4,640,307	+		PP_4105	0.89	-0.4
4,640,307	+		PP_4105	0.89	-0.4
4,640,307	+		PP_4105	0.89	-1.2
4,640,307	+		PP_4105	0.89	-0.2
4,640,308	-		PP_4105	0.89	-0.9
4,640,308	-		PP_4105	0.89	+2.5
4,640,308	-		PP_4105	0.89	-0.6
4,640,315	-				+0.5
4,640,362	+				+0.1
4,640,362	+				+0.7
4,640,362	+				-0.2
4,640,407	+				+0.2
4,640,518	-				+0.7
4,640,538	+				+0.6
4,640,538	+				-2.3
4,640,538	+				+0.1
4,640,538	+				+0.0
4,640,538	+				-0.5
4,640,539	-				+0.3
4,640,539	-				-0.5
4,640,539	-				+0.0
4,640,564	+		PP_4106	0.10	-0.0
4,640,565	-		PP_4106	0.10	-1.5
4,640,673	+		PP_4106	0.18	+0.7
4,640,673	+		PP_4106	0.18	-1.2
4,640,674	-		PP_4106	0.18	-0.8
4,640,739	+		PP_4106	0.23	-0.2
4,640,739	+		PP_4106	0.23	-1.7
4,640,739	+		PP_4106	0.23	-2.4
4,640,739	+		PP_4106	0.23	+0.1
4,640,739	+		PP_4106	0.23	+0.6
4,640,740	-		PP_4106	0.23	-0.9
4,640,740	-		PP_4106	0.23	+0.0
4,640,740	-		PP_4106	0.23	+0.8
4,640,740	-				+0.5
4,640,740	-		PP_4106	0.23	-0.3
4,640,860	-		PP_4106	0.32	-0.7
4,640,970	-		PP_4106	0.40	+0.5
4,640,987	+		PP_4106	0.41	+0.0
4,641,051	+		PP_4106	0.46	-0.7
4,641,051	+		PP_4106	0.46	+0.3
4,641,069	+		PP_4106	0.47	+0.3
4,641,070	-		PP_4106	0.47	-0.3