Strain Fitness in Pseudomonas putida KT2440 around PP_3944

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
4,445,587	-				-1.4
4,445,588	+				-0.6
4,445,588	+				+0.9
4,445,588	+				+0.7
4,445,588	+				-0.7
4,445,704	+		PP_3943	0.11	+0.2
4,445,704	+		PP_3943	0.11	+0.1
4,445,819	-		PP_3943	0.26	+0.9
4,445,819	-		PP_3943	0.26	+0.2
4,445,819	-		PP_3943	0.26	+0.7
4,445,876	-		PP_3943	0.33	+0.1
4,445,992	+		PP_3943	0.47	-0.5
4,445,992	+		PP_3943	0.47	+0.1
4,445,993	-		PP_3943	0.47	-0.4
4,446,137	-		PP_3943	0.65	+0.6
4,446,140	+		PP_3943	0.65	+0.3
4,446,140	+		PP_3943	0.65	+0.4
4,446,174	-		PP_3943	0.70	+0.8
4,446,199	+		PP_3943	0.73	-0.3
4,446,200	-		PP_3943	0.73	-1.6
4,446,253	+		PP_3943	0.79	-0.2
4,446,253	+				+0.5
4,446,253	+		PP_3943	0.79	+0.9
4,446,253	+		PP_3943	0.79	-0.7
4,446,253	+		PP_3943	0.79	+0.7
4,446,254	-		PP_3943	0.79	+0.6
4,446,254	-		PP_3943	0.79	-0.9
4,446,254	-		PP_3943	0.79	+1.2
4,446,254	-		PP_3943	0.79	+1.7
4,446,254	-		PP_3943	0.79	+1.2
4,446,254	-		PP_3943	0.79	+0.1
4,446,254	-		PP_3943	0.79	-0.9
4,446,254	-		PP_3943	0.79	-0.8
4,446,266	-		PP_3943	0.81	-0.5
4,446,364	+				-0.3
4,446,364	+				-0.6
4,446,364	+				-0.3
4,446,365	-				+1.8
4,446,365	-				-0.2
4,446,395	+				+0.5
4,446,450	+				-3.3
4,446,450	+				+0.9
4,446,450	+				-0.8
4,446,450	+				-0.1
4,446,451	-				+0.0
4,446,492	+				+1.1
4,446,493	-				+0.6
4,446,493	-				+0.4
4,446,558	+		PP_3944	0.12	+0.2
4,446,559	-		PP_3944	0.12	+2.2
4,446,891	+		PP_3944	0.41	-0.2
4,446,891	+		PP_3944	0.41	-1.4
4,446,891	+				+0.2
4,446,892	-		PP_3944	0.41	+0.1
4,446,895	-		PP_3944	0.42	-1.0
4,446,918	+		PP_3944	0.44	+0.0
4,446,918	+		PP_3944	0.44	+1.0
4,446,918	+		PP_3944	0.44	-1.0
4,446,918	+		PP_3944	0.44	+1.3
4,446,921	+		PP_3944	0.44	+0.0
4,446,922	-		PP_3944	0.44	-1.1
4,446,922	-		PP_3944	0.44	+0.2
4,447,258	-		PP_3944	0.73	-0.1
4,447,258	-		PP_3944	0.73	-1.2
4,447,258	-		PP_3944	0.73	-0.5
4,447,270	-		PP_3944	0.74	-0.1
4,447,270	-		PP_3944	0.74	-0.5
4,447,270	-		PP_3944	0.74	+0.3
4,447,312	-		PP_3944	0.78	-0.5
4,447,312	-		PP_3944	0.78	+0.3
4,447,312	-		PP_3944	0.78	+1.0
4,447,312	-		PP_3944	0.78	+0.1
4,447,321	+		PP_3944	0.79	+0.2
4,447,568	+				-1.6
4,447,568	+				+0.5
4,447,569	-				+0.5
4,447,589	-				+0.1
4,447,715	-				-0.5
4,447,718	+				+1.4
4,447,718	+				-0.5
4,447,719	-				+1.5
4,447,719	-				-0.7
4,447,929	+				-1.0
4,447,930	-				-0.7
4,447,930	-				+0.5
4,447,985	+				+2.5
4,447,985	+				+0.8
4,448,048	+		PP_3945	0.15	+0.2
4,448,048	+		PP_3945	0.15	+0.1
4,448,049	-		PP_3945	0.15	-1.4
4,448,549	+		PP_3945	0.63	-0.1
4,448,549	+		PP_3945	0.63	+0.1
4,448,549	+		PP_3945	0.63	-0.2
4,448,550	-		PP_3945	0.63	-0.2
4,448,550	-		PP_3945	0.63	-0.5
4,448,550	-		PP_3945	0.63	+1.1
4,448,550	-		PP_3945	0.63	-1.3