Strain Fitness in Pseudomonas putida KT2440 around PP_3516

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
3,988,968	+		PP_3515	0.71	+0.5
3,989,051	-		PP_3515	0.75	-0.2
3,989,115	+		PP_3515	0.78	+1.2
3,989,116	-		PP_3515	0.78	+0.6
3,989,116	-		PP_3515	0.78	-0.9
3,989,116	-		PP_3515	0.78	-0.1
3,989,133	+		PP_3515	0.79	+0.9
3,989,241	+		PP_3515	0.84	+0.1
3,989,242	-		PP_3515	0.84	-1.1
3,989,495	+				+0.4
3,989,496	-				-0.4
3,989,603	-				-0.7
3,989,638	+				-0.4
3,989,639	-				-0.1
3,989,644	-				+0.9
3,989,661	+				-0.6
3,989,662	-				-0.5
3,989,662	-				-0.0
3,989,765	+				+0.4
3,989,766	-				-0.8
3,989,794	+				-0.9
3,989,795	-				+0.5
3,989,795	-				-0.9
3,989,956	+		PP_3516	0.25	+0.2
3,989,956	+		PP_3516	0.25	-0.8
3,990,062	-		PP_3516	0.36	-0.2
3,990,151	+		PP_3516	0.45	-0.2
3,990,152	-		PP_3516	0.46	-0.2
3,990,374	-		PP_3516	0.69	-1.2
3,990,374	-		PP_3516	0.69	+0.9
3,990,478	+		PP_3516	0.80	-0.9
3,990,479	-		PP_3516	0.80	-0.7
3,990,486	+		PP_3516	0.80	-2.5
3,990,628	+				-0.1
3,990,628	+				-0.1
3,990,658	-				-0.7
3,990,663	+				+1.3
3,990,664	-				-0.6
3,990,673	+				+1.2
3,990,673	+				-0.2
3,990,673	+				-0.7
3,990,674	-				-0.7
3,990,887	+		PP_3517	0.17	+0.9
3,990,887	+		PP_3517	0.17	+0.9
3,990,944	+		PP_3517	0.24	-0.3
3,990,944	+		PP_3517	0.24	-0.2
3,990,945	-		PP_3517	0.24	-1.5
3,990,945	-		PP_3517	0.24	+0.0
3,990,950	+		PP_3517	0.24	-0.8
3,990,951	-		PP_3517	0.24	-0.4
3,991,007	+		PP_3517	0.31	+0.7
3,991,008	-		PP_3517	0.31	+0.8
3,991,130	+		PP_3517	0.44	-0.3
3,991,170	-		PP_3517	0.49	+0.8
3,991,307	-		PP_3517	0.64	+0.6
3,991,404	+		PP_3517	0.75	+0.4
3,991,404	+		PP_3517	0.75	+1.5
3,991,442	+		PP_3517	0.79	+0.1
3,991,442	+		PP_3517	0.79	-0.4
3,991,442	+		PP_3517	0.79	-0.3
3,991,442	+		PP_3517	0.79	+0.2
3,991,442	+		PP_3517	0.79	-1.9
3,991,443	-		PP_3517	0.79	+0.4
3,991,443	-		PP_3517	0.79	+0.8
3,991,443	-		PP_3517	0.79	-0.5