Strain Fitness in Pseudomonas putida KT2440 around PP_3356

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
3,793,634	+		PP_3355	0.25	-0.1
3,793,635	-		PP_3355	0.25	-0.2
3,793,844	+		PP_3355	0.43	+0.8
3,793,845	-		PP_3355	0.43	+0.1
3,793,920	+		PP_3355	0.49	-0.7
3,793,920	+		PP_3355	0.49	-0.1
3,793,920	+		PP_3355	0.49	-1.7
3,793,920	+		PP_3355	0.49	+0.2
3,793,921	-		PP_3355	0.49	-0.1
3,794,102	-		PP_3355	0.65	-0.3
3,794,102	-		PP_3355	0.65	-1.8
3,794,170	+		PP_3355	0.70	-0.1
3,794,170	+		PP_3355	0.70	+0.4
3,794,171	-		PP_3355	0.70	-1.2
3,794,330	-		PP_3355	0.84	+0.2
3,794,357	-		PP_3355	0.86	+1.2
3,794,357	-		PP_3355	0.86	+0.1
3,794,357	-		PP_3355	0.86	-1.2
3,794,403	+		PP_3355	0.90	-0.9
3,794,936	+		PP_3356	0.19	-0.0
3,794,936	+		PP_3356	0.19	+1.6
3,794,936	+		PP_3356	0.19	+0.9
3,794,940	+		PP_3356	0.20	-0.3
3,794,940	+		PP_3356	0.20	+0.7
3,794,941	-		PP_3356	0.20	-0.9
3,794,941	-		PP_3356	0.20	-0.1
3,794,994	-		PP_3356	0.23	+0.1
3,795,026	-		PP_3356	0.24	+0.8
3,795,096	+		PP_3356	0.28	-0.5
3,795,096	+		PP_3356	0.28	-1.1
3,795,147	+		PP_3356	0.31	-1.6
3,795,148	-		PP_3356	0.31	+0.1
3,795,160	+		PP_3356	0.31	-0.3
3,795,160	+		PP_3356	0.31	-0.2
3,795,243	+		PP_3356	0.36	-0.2
3,795,244	-		PP_3356	0.36	-1.5
3,795,244	-		PP_3356	0.36	-0.0
3,795,498	+		PP_3356	0.49	+0.6
3,795,577	-		PP_3356	0.53	-0.4
3,795,577	-		PP_3356	0.53	-0.1
3,795,595	-		PP_3356	0.54	+1.4
3,795,595	-		PP_3356	0.54	+0.1
3,795,595	-		PP_3356	0.54	+0.6
3,795,866	+		PP_3356	0.69	-0.3
3,795,866	+		PP_3356	0.69	+0.1
3,795,866	+		PP_3356	0.69	+0.5
3,795,866	+		PP_3356	0.69	+0.8
3,795,866	+		PP_3356	0.69	-0.3
3,795,866	+		PP_3356	0.69	-1.2
3,795,867	-		PP_3356	0.69	+0.4
3,795,867	-		PP_3356	0.69	-0.6
3,795,867	-		PP_3356	0.69	-0.1
3,795,867	-		PP_3356	0.69	+0.3
3,795,867	-		PP_3356	0.69	+0.8
3,795,867	-		PP_3356	0.69	+0.6
3,795,867	-		PP_3356	0.69	+0.6
3,795,867	-		PP_3356	0.69	-0.5
3,795,867	-		PP_3356	0.69	+0.3
3,795,868	+		PP_3356	0.69	+0.6
3,795,868	+		PP_3356	0.69	+0.9
3,795,868	+		PP_3356	0.69	-0.8
3,795,869	-		PP_3356	0.69	+0.0
3,796,060	-		PP_3356	0.79	-0.7
3,796,060	-		PP_3356	0.79	-0.3
3,796,074	+		PP_3356	0.80	+0.9
3,796,074	+		PP_3356	0.80	-0.8
3,796,074	+		PP_3356	0.80	+0.3
3,796,074	+		PP_3356	0.80	+0.2
3,796,074	+		PP_3356	0.80	-0.6
3,796,075	-		PP_3356	0.80	-0.2
3,796,075	-		PP_3356	0.80	-0.1
3,796,160	+		PP_3356	0.84	+0.5
3,796,206	+		PP_3356	0.87	-0.1
3,796,207	-		PP_3356	0.87	-0.4
3,796,207	-		PP_3356	0.87	+0.6
3,796,207	-		PP_3356	0.87	-1.2
3,796,478	+				+0.3
3,796,478	+				-0.4
3,796,478	+				-2.0
3,796,479	-				-0.2
3,796,701	-		PP_3357	0.11	-1.9
3,796,836	+		PP_3357	0.20	-1.5
3,796,837	-		PP_3357	0.20	-0.2
3,797,109	-		PP_3357	0.39	+0.1
3,797,164	+		PP_3357	0.43	-0.0
3,797,165	-		PP_3357	0.43	-0.1
3,797,165	-		PP_3357	0.43	+0.5