Strain Fitness in Pseudomonas putida KT2440 around PP_3278

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
3,711,029	+		PP_3276	0.13	-0.1
3,711,029	+		PP_3276	0.13	-0.7
3,711,287	+		PP_3276	0.47	-0.8
3,711,287	+		PP_3276	0.47	-0.1
3,711,288	-		PP_3276	0.47	+0.1
3,711,522	-		PP_3276	0.78	-0.1
3,711,522	-		PP_3276	0.78	+0.3
3,711,665	+				-0.3
3,711,665	+				+1.6
3,711,684	+				+0.0
3,711,684	+				-1.0
3,711,684	+				-0.6
3,711,684	+				+0.1
3,711,685	-				+0.0
3,711,685	-				+0.3
3,711,685	-				-1.3
3,711,731	-		PP_3277	0.11	+0.8
3,711,748	+		PP_3277	0.17	-0.6
3,711,749	-		PP_3277	0.18	-0.4
3,711,749	-		PP_3277	0.18	+0.4
3,711,849	-		PP_3277	0.53	-0.7
3,711,860	-		PP_3277	0.57	-0.9
3,711,860	-		PP_3277	0.57	-0.1
3,712,040	+				-0.5
3,712,040	+				-1.5
3,712,041	-				+1.5
3,712,142	+		PP_3278	0.14	+0.2
3,712,176	-		PP_3278	0.17	-2.1
3,712,489	-		PP_3278	0.49	+0.3
3,712,534	+		PP_3278	0.53	-0.7
3,712,535	-		PP_3278	0.53	-0.0
3,712,610	+		PP_3278	0.61	+0.1
3,712,610	+		PP_3278	0.61	+0.1
3,712,611	-		PP_3278	0.61	+0.1
3,712,628	+		PP_3278	0.63	-0.5
3,712,700	+		PP_3278	0.70	-0.7
3,712,706	+		PP_3278	0.71	-2.5
3,712,992	-				-0.7
3,713,012	+				-1.4
3,713,086	+				+0.4
3,713,294	+				+0.8
3,713,294	+				-1.9
3,713,294	+				+0.6
3,713,295	-				-0.2
3,713,638	+		PP_3279	0.34	-0.2
3,713,638	+		PP_3279	0.34	-0.5
3,713,702	+		PP_3279	0.38	+0.1
3,713,702	+		PP_3279	0.38	+0.1
3,713,743	+		PP_3279	0.42	-0.1
3,713,743	+		PP_3279	0.42	+1.7
3,713,744	-		PP_3279	0.42	-0.1
3,713,790	-		PP_3279	0.45	-0.2
3,713,790	-		PP_3279	0.45	+0.1
3,713,794	-		PP_3279	0.45	-0.4
3,713,939	+		PP_3279	0.56	+0.3
3,713,939	+		PP_3279	0.56	-0.9
3,713,940	-		PP_3279	0.57	+0.6
3,713,940	-		PP_3279	0.57	+0.8
3,713,940	-		PP_3279	0.57	+0.5