Strain Fitness in Pseudomonas putida KT2440 around PP_3144

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
3,559,262	-		PP_3143	0.11	+0.3
3,559,273	+		PP_3143	0.12	+0.8
3,559,274	-		PP_3143	0.12	+0.3
3,559,274	-		PP_3143	0.12	+0.3
3,559,297	-		PP_3143	0.15	-0.8
3,559,466	-		PP_3143	0.33	-0.1
3,559,483	+				-0.6
3,559,484	-		PP_3143	0.35	+0.7
3,559,640	-		PP_3143	0.51	+0.1
3,559,864	+		PP_3143	0.75	+0.4
3,560,055	+				+0.6
3,560,055	+				-0.5
3,560,113	+				-2.4
3,560,182	+				-1.1
3,560,182	+				-0.2
3,560,182	+				+0.4
3,560,182	+				-1.1
3,560,182	+				+0.3
3,560,182	+				-1.4
3,560,182	+				+0.3
3,560,183	-				+0.5
3,560,183	-				+1.1
3,560,183	-				-1.1
3,560,183	-				-0.2
3,560,183	-				-1.4
3,560,183	-				+1.4
3,560,183	-				-1.4
3,560,242	+				-0.6
3,560,243	-				+0.0
3,560,252	-				+0.0
3,560,373	+				-0.5
3,560,451	+		PP_3144	0.15	-0.2
3,560,452	-		PP_3144	0.15	+0.6
3,560,610	-		PP_3144	0.26	+0.8
3,560,757	-		PP_3144	0.37	+0.4
3,561,097	+		PP_3144	0.62	+0.7
3,561,097	+		PP_3144	0.62	+0.3
3,561,097	+		PP_3144	0.62	+0.4
3,561,152	+		PP_3144	0.66	-0.4
3,561,152	+		PP_3144	0.66	-0.3
3,561,155	+		PP_3144	0.66	+1.7
3,561,155	+		PP_3144	0.66	-0.2
3,561,155	+		PP_3144	0.66	-2.0
3,561,155	+		PP_3144	0.66	+0.6
3,561,155	+		PP_3144	0.66	-0.9
3,561,156	-		PP_3144	0.66	+0.2
3,561,156	-		PP_3144	0.66	+0.5
3,561,548	-				+0.1
3,561,572	+				+1.2
3,561,573	-				-1.3
3,561,573	-				+1.8
3,561,627	+				+0.4
3,561,857	+		PP_3145	0.18	+0.6
3,561,858	-		PP_3145	0.18	-0.8
3,561,975	+		PP_3145	0.32	-0.3
3,561,994	+		PP_3145	0.35	+0.3
3,562,138	+		PP_3145	0.52	-0.3
3,562,197	+		PP_3145	0.59	-1.2
3,562,197	+				-0.1
3,562,197	+		PP_3145	0.59	-0.3
3,562,207	+		PP_3145	0.60	-0.8
3,562,279	-		PP_3145	0.69	-0.6
3,562,427	+		PP_3145	0.87	-0.7
3,562,461	+				-3.1