Strain Fitness in Pseudomonas putida KT2440 around PP_2795

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
3,183,439	+				-0.7
3,183,439	+				-0.5
3,183,820	+		PP_2794	0.40	+1.7
3,183,988	-		PP_2794	0.62	-0.2
3,184,084	-		PP_2794	0.74	-0.8
3,184,278	+				+0.1
3,184,297	-				+1.0
3,184,315	+				-1.4
3,184,319	+				-0.8
3,184,319	+				+0.0
3,184,320	-				+0.4
3,184,320	-				-0.7
3,184,320	-				-1.7
3,184,320	-				+0.1
3,184,320	-				-2.1
3,184,320	-				+0.1
3,184,320	-				+0.2
3,184,320	-				-0.7
3,184,320	-				-1.8
3,184,460	+				-0.5
3,184,484	+				-0.3
3,184,485	-				-0.1
3,184,722	+		PP_2795	0.22	+0.5
3,184,850	+		PP_2795	0.30	-0.4
3,184,851	-		PP_2795	0.30	-0.3
3,184,932	-		PP_2795	0.34	+0.4
3,184,932	-		PP_2795	0.34	-0.0
3,184,932	-		PP_2795	0.34	+0.1
3,184,989	-		PP_2795	0.38	+0.6
3,185,086	+		PP_2795	0.44	-1.2
3,185,340	-		PP_2795	0.59	-1.0
3,185,358	-		PP_2795	0.60	-0.1
3,185,721	+		PP_2795	0.82	+0.7
3,185,943	+				-0.3
3,186,027	+				-1.7
3,186,027	+				-0.6
3,186,080	+				-1.5
3,186,081	-				+0.2
3,186,177	-		PP_2796	0.35	+0.6
3,186,182	+		PP_2796	0.36	+0.8
3,186,182	+		PP_2796	0.36	-1.2
3,186,183	-		PP_2796	0.36	-0.1
3,186,196	-		PP_2796	0.40	-0.2
3,186,308	+		PP_2796	0.75	+0.9
3,186,308	+		PP_2796	0.75	-0.1
3,186,309	-		PP_2796	0.75	-1.2
3,186,398	+				-1.7
3,186,628	+		PP_2797	0.15	+0.1
3,186,629	-		PP_2797	0.15	-0.2
3,186,670	+		PP_2797	0.17	+2.0
3,186,671	-		PP_2797	0.17	+0.2
3,186,671	-		PP_2797	0.17	-0.4
3,186,671	-		PP_2797	0.17	+0.0
3,186,691	+		PP_2797	0.18	+0.3
3,186,691	+		PP_2797	0.18	-1.3
3,186,691	+		PP_2797	0.18	+0.8
3,186,691	+		PP_2797	0.18	-0.7
3,186,691	+		PP_2797	0.18	+0.8
3,186,692	-		PP_2797	0.19	+0.6
3,186,692	-		PP_2797	0.19	+0.2
3,186,692	-		PP_2797	0.19	+0.8
3,186,697	+		PP_2797	0.19	+0.0
3,186,698	-		PP_2797	0.19	-0.5
3,186,862	+		PP_2797	0.29	+0.9
3,186,964	+		PP_2797	0.35	-0.3
3,186,965	-		PP_2797	0.35	-0.3
3,186,965	-		PP_2797	0.35	-0.4
3,186,965	-		PP_2797	0.35	-0.2