Strain Fitness in Pseudomonas putida KT2440 around PP_1992

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
2,258,995	+		PP_1992	0.65	+0.2
2,258,996	-		PP_1992	0.66	-0.8
2,259,062	+		PP_1992	0.72	+0.9
2,259,178	+		PP_1992	0.84	-0.5
2,259,178	+		PP_1992	0.84	-0.5
2,259,179	-		PP_1992	0.84	-0.8
2,259,179	-		PP_1992	0.84	+0.7
2,259,207	+		PP_1992	0.87	-0.8
2,259,208	-				+0.5
2,259,208	-		PP_1992	0.87	+0.3
2,259,208	-		PP_1992	0.87	+0.4
2,259,208	-		PP_1992	0.87	+0.0
2,259,208	-		PP_1992	0.87	-0.1
2,259,208	-		PP_1992	0.87	+0.8
2,259,208	-		PP_1992	0.87	+0.3
2,259,220	+		PP_1992	0.88	-1.7
2,259,220	+		PP_1992	0.88	-1.0
2,259,220	+		PP_1992	0.88	-0.4
2,259,221	-		PP_1992	0.88	-0.8
2,259,326	+				-0.2
2,259,339	+				-1.1
2,259,397	+				-0.5
2,259,397	+				-2.0
2,259,398	-				+0.6
2,259,398	-				+0.3
2,259,398	-				-0.1
2,259,398	-				-2.6
2,259,641	+				-0.8
2,259,785	+		PP_1993	0.14	-0.8
2,259,785	+		PP_1993	0.14	-0.6
2,259,786	-		PP_1993	0.14	-1.2
2,259,786	-		PP_1993	0.14	-0.7
2,259,786	-		PP_1993	0.14	-0.5
2,259,787	+		PP_1993	0.14	-0.1
2,259,788	-		PP_1993	0.14	-1.0
2,259,788	-		PP_1993	0.14	-0.3
2,259,872	+		PP_1993	0.17	-0.5
2,259,872	+		PP_1993	0.17	-0.8
2,259,917	-		PP_1993	0.18	-1.7