Strain Fitness in Pseudomonas putida KT2440 around PP_1651

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
1,844,335	+		PP_1650	0.83	+1.2
1,844,708	+				+1.3
1,844,708	+				+1.3
1,844,708	+				+1.4
1,844,708	+				+1.3
1,844,709	-				+1.3
1,844,709	-				+1.2
1,844,712	+				+1.3
1,844,713	-				+1.3
1,844,713	-				+1.3
1,844,852	+				+0.9
1,844,852	+				+0.8
1,844,853	-				+0.3
1,844,882	+				+0.1
1,844,882	+				+0.1
1,844,882	+				+0.1
1,844,882	+				+0.7
1,844,882	+				+0.3
1,844,883	-				+0.0
1,844,883	-				-0.3
1,844,883	-				+0.4
1,844,883	-				-0.8
1,844,883	-				-0.4
1,844,885	+				-0.4
1,844,885	+				+2.1
1,844,885	+				+0.4
1,844,892	+				+1.1
1,844,893	-				+0.8
1,844,953	+				+0.6
1,845,053	+		PP_1651	0.14	-1.6
1,845,054	-		PP_1651	0.14	-1.5
1,845,054	-		PP_1651	0.14	-1.2
1,845,147	-		PP_1651	0.27	-1.1
1,845,268	+		PP_1651	0.42	+0.2
1,845,268	+		PP_1651	0.42	-1.0
1,845,299	+		PP_1651	0.46	-0.8
1,845,299	+		PP_1651	0.46	-1.1
1,845,300	-		PP_1651	0.47	-1.0
1,845,546	-		PP_1651	0.79	-0.8
1,845,569	+		PP_1651	0.82	+0.2
1,845,586	+		PP_1651	0.84	+0.3
1,845,677	+				+0.8
1,845,677	+				+1.5
1,845,677	+				-0.1
1,845,678	-				-0.1
1,845,788	+				-0.8
1,845,788	+				-0.2
1,845,788	+				+0.2
1,845,788	+				+1.0
1,845,789	-				-0.3
1,845,789	-				-0.4
1,845,790	+				+0.1
1,845,790	+				-0.8
1,846,089	+		PP_1652	0.28	+1.1
1,846,090	-		PP_1652	0.28	+0.3
1,846,227	+		PP_1652	0.38	-0.7
1,846,228	-		PP_1652	0.38	-0.1
1,846,228	-		PP_1652	0.38	+0.1
1,846,228	-		PP_1652	0.38	-0.7
1,846,405	+		PP_1652	0.50	+0.7
1,846,655	+		PP_1652	0.69	+0.2
1,846,656	-		PP_1652	0.69	+1.4