Strain Fitness in Pseudomonas putida KT2440 around PP_1338

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1337 and PP_1338 overlap by 8 nucleotidesPP_1338 and PP_1339 overlap by 4 nucleotidesPP_1339 and PP_1340 are separated by 5 nucleotides PP_1337: PP_1337 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,523,297 to 1,524,376 _1337 PP_1338: PP_1338 - UDP-N-acetylmuramate--L-alanine ligase, at 1,524,369 to 1,525,817 _1338 PP_1339: PP_1339 - D-alanine--D-alanine ligase B, at 1,525,814 to 1,526,770 _1339 PP_1340: PP_1340 - Cell division protein FtsQ, at 1,526,776 to 1,527,645 _1340 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -1 0 1at 1526.768 kb on + strandat 1526.768 kb on + strandat 1526.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
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1,526,768 + -0.8
1,526,768 + +0.4
1,526,771 + +0.0

Or see this region's nucleotide sequence