Strain Fitness in Pseudomonas putida KT2440 around PP_0896

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
1,035,883	-		PP_0894	0.25	-0.4
1,035,883	-		PP_0894	0.25	+0.9
1,035,883	-		PP_0894	0.25	-2.0
1,035,883	-		PP_0894	0.25	-3.0
1,035,928	-		PP_0894	0.37	+0.5
1,035,928	-		PP_0894	0.37	-0.8
1,036,149	+				+0.6
1,036,150	-				+0.2
1,036,150	-				+0.2
1,036,153	-				+0.5
1,036,153	-				+0.8
1,036,153	-				-1.7
1,036,161	-				-0.3
1,036,200	-				+0.1
1,036,200	-				-0.0
1,036,219	-				+1.1
1,036,219	-				-0.3
1,036,219	-				+0.1
1,036,231	-				-1.4
1,036,303	+				-1.2
1,036,303	+				-0.4
1,036,303	+				-0.5
1,036,335	+				-0.3
1,036,336	-				+0.9
1,036,336	-				+0.0
1,036,364	+		PP_0895	0.12	-1.8
1,036,365	-		PP_0895	0.12	-0.2
1,036,392	+		PP_0895	0.16	-1.8
1,036,392	+		PP_0895	0.16	+0.7
1,036,392	+		PP_0895	0.16	-0.1
1,036,392	+		PP_0895	0.16	+0.4
1,036,423	-		PP_0895	0.21	+1.1
1,036,434	+		PP_0895	0.23	-0.0
1,036,434	+		PP_0895	0.23	-0.9
1,036,435	-		PP_0895	0.24	-1.9
1,036,435	-		PP_0895	0.24	+0.5
1,036,435	-		PP_0895	0.24	+2.2
1,036,499	+		PP_0895	0.34	+1.0
1,036,578	+		PP_0895	0.48	+0.1
1,036,578	+		PP_0895	0.48	-0.7
1,036,579	-		PP_0895	0.48	-0.0
1,036,579	-		PP_0895	0.48	+0.9
1,036,579	-		PP_0895	0.48	-0.9
1,036,582	-		PP_0895	0.48	+0.6
1,036,582	-		PP_0895	0.48	+0.4
1,036,612	-		PP_0895	0.53	-0.3
1,036,660	-				+2.5
1,036,660	-		PP_0895	0.62	+0.5
1,036,660	-		PP_0895	0.62	+1.3
1,036,687	-		PP_0895	0.66	-0.2
1,036,809	+		PP_0895	0.87	+1.5
1,036,810	-		PP_0895	0.87	-1.2
1,036,908	-				+0.4
1,037,147	+		PP_0896	0.30	-0.2
1,037,147	+		PP_0896	0.30	-2.4
1,037,147	+		PP_0896	0.30	+1.2
1,037,148	-		PP_0896	0.30	+1.5
1,037,148	-		PP_0896	0.30	-0.0
1,037,148	-		PP_0896	0.30	+0.6
1,037,192	+		PP_0896	0.35	+2.1
1,037,351	+		PP_0896	0.54	+1.1
1,037,425	+		PP_0896	0.62	+0.7
1,037,425	+		PP_0896	0.62	+1.3
1,037,426	-		PP_0896	0.62	+0.2
1,037,458	+		PP_0896	0.66	+0.9
1,037,459	-		PP_0896	0.66	+0.0
1,037,459	-		PP_0896	0.66	-1.2
1,037,668	-				-1.7
1,037,820	+				-0.3
1,037,873	-				-1.7
1,037,873	-				+0.1