Strain Fitness in Pseudomonas putida KT2440 around PP_0572

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0570 and PP_0571 are separated by 151 nucleotidesPP_0571 and PP_0572 are separated by 35 nucleotidesPP_0572 and PP_0573 are separated by 32 nucleotides PP_0570: PP_0570 - lipoprotein of unknown function, at 663,135 to 668,036 _0570 PP_0571: PP_0571 - conserved membrane protein of unknown function, at 668,188 to 668,523 _0571 PP_0572: PP_0572 - peptidoglycan glycosyltransferase, at 668,559 to 670,913 _0572 PP_0573: PP_0573 - conserved protein of unknown function, at 670,946 to 672,670 _0573 Position (kb) 668 669 670 671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 667.602 kb on + strandat 667.602 kb on + strandat 667.602 kb on + strandat 667.603 kb on - strandat 667.610 kb on + strandat 667.611 kb on - strandat 667.849 kb on - strandat 667.861 kb on + strandat 667.864 kb on - strandat 667.891 kb on - strandat 667.891 kb on - strandat 667.912 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 668.282 kb on + strand, within PP_0571at 668.282 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strandat 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.570 kb on - strandat 668.771 kb on - strandat 668.817 kb on + strand, within PP_0572at 668.817 kb on + strand, within PP_0572at 668.836 kb on - strand, within PP_0572at 668.966 kb on + strand, within PP_0572at 668.992 kb on + strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 669.255 kb on + strand, within PP_0572at 669.256 kb on - strand, within PP_0572at 669.389 kb on + strand, within PP_0572at 669.389 kb on + strand, within PP_0572at 669.465 kb on - strand, within PP_0572at 669.465 kb on - strand, within PP_0572at 669.516 kb on + strand, within PP_0572at 669.516 kb on + strand, within PP_0572at 669.530 kb on - strand, within PP_0572at 669.581 kb on - strand, within PP_0572at 669.615 kb on + strand, within PP_0572at 669.682 kb on - strand, within PP_0572at 669.682 kb on - strand, within PP_0572at 669.682 kb on - strand, within PP_0572at 669.792 kb on + strand, within PP_0572at 669.844 kb on + strand, within PP_0572at 669.844 kb on + strand, within PP_0572at 669.845 kb on - strand, within PP_0572at 670.035 kb on - strand, within PP_0572at 670.035 kb on - strand, within PP_0572at 670.178 kb on - strand, within PP_0572at 670.178 kb on - strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.484 kb on - strand, within PP_0572at 670.738 kb on + strandat 670.738 kb on + strandat 670.738 kb on + strandat 670.739 kb on - strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.912 kb on - strandat 670.941 kb on + strandat 670.941 kb on + strandat 670.942 kb on - strandat 671.005 kb on + strandat 671.006 kb on - strandat 671.096 kb on + strandat 671.096 kb on + strandat 671.097 kb on - strandat 671.097 kb on - strandat 671.139 kb on - strand, within PP_0573at 671.160 kb on + strand, within PP_0573at 671.160 kb on + strand, within PP_0573at 671.161 kb on - strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.370 kb on - strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.387 kb on + strand, within PP_0573at 671.388 kb on - strand, within PP_0573at 671.388 kb on - strand, within PP_0573at 671.444 kb on + strand, within PP_0573at 671.445 kb on - strand, within PP_0573at 671.445 kb on - strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.449 kb on - strand, within PP_0573at 671.457 kb on - strand, within PP_0573at 671.492 kb on + strand, within PP_0573at 671.493 kb on - strand, within PP_0573at 671.493 kb on - strand, within PP_0573at 671.558 kb on + strand, within PP_0573at 671.559 kb on - strand, within PP_0573at 671.559 kb on - strand, within PP_0573at 671.807 kb on + strandat 671.807 kb on + strand, within PP_0573at 671.811 kb on - strand, within PP_0573at 671.825 kb on + strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.835 kb on - strand, within PP_0573at 671.835 kb on - strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.905 kb on - strand, within PP_0573

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
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667,602 + +1.5
667,602 + -0.2
667,602 + -0.9
667,603 - -0.5
667,610 + +0.2
667,611 - -0.5
667,849 - -0.2
667,861 + +0.0
667,864 - -2.5
667,891 - +1.7
667,891 - -1.0
667,912 - -0.1
667,942 - -1.5
667,942 - +3.5
668,282 + PP_0571 0.28 -0.3
668,282 + PP_0571 0.28 +0.7
668,473 + PP_0571 0.85 -1.4
668,473 + PP_0571 0.85 +0.1
668,473 + PP_0571 0.85 -2.1
668,473 + PP_0571 0.85 +0.8
668,473 + PP_0571 0.85 -0.1
668,474 - PP_0571 0.85 -1.2
668,474 - PP_0571 0.85 +0.2
668,474 - PP_0571 0.85 -0.1
668,474 - PP_0571 0.85 -2.1
668,481 + PP_0571 0.87 +0.2
668,481 + PP_0571 0.87 +0.1
668,481 + PP_0571 0.87 -1.0
668,481 + PP_0571 0.87 +0.2
668,481 + PP_0571 0.87 -0.4
668,481 + PP_0571 0.87 -0.2
668,481 + PP_0571 0.87 +0.2
668,481 + PP_0571 0.87 +0.3
668,481 + PP_0571 0.87 +0.2
668,481 + PP_0571 0.87 +0.3
668,481 + +0.5
668,481 + PP_0571 0.87 +0.4
668,481 + PP_0571 0.87 +0.3
668,481 + PP_0571 0.87 -0.2
668,481 + PP_0571 0.87 -1.3
668,482 - PP_0571 0.88 -0.1
668,482 - PP_0571 0.88 +0.4
668,482 - PP_0571 0.88 -1.5
668,482 - PP_0571 0.88 +1.2
668,482 - PP_0571 0.88 -1.2
668,482 - PP_0571 0.88 +0.2
668,482 - PP_0571 0.88 -0.3
668,482 - PP_0571 0.88 +0.3
668,482 - PP_0571 0.88 -0.5
668,482 - PP_0571 0.88 +0.2
668,482 - PP_0571 0.88 -0.3
668,570 - -0.8
668,771 - -0.2
668,817 + PP_0572 0.11 -0.3
668,817 + PP_0572 0.11 -0.1
668,836 - PP_0572 0.12 -0.6
668,966 + PP_0572 0.17 -0.3
668,992 + PP_0572 0.18 -1.4
668,993 - PP_0572 0.18 -2.4
668,993 - PP_0572 0.18 +0.4
668,993 - PP_0572 0.18 +0.1
669,255 + PP_0572 0.30 +1.5
669,256 - PP_0572 0.30 +0.8
669,389 + PP_0572 0.35 -1.2
669,389 + PP_0572 0.35 +1.4
669,465 - PP_0572 0.38 +0.8
669,465 - PP_0572 0.38 +0.3
669,516 + PP_0572 0.41 -0.2
669,516 + PP_0572 0.41 -1.3
669,530 - PP_0572 0.41 -0.8
669,581 - PP_0572 0.43 +0.5
669,615 + PP_0572 0.45 +1.0
669,682 - PP_0572 0.48 -0.6
669,682 - PP_0572 0.48 -0.4
669,682 - PP_0572 0.48 -0.1
669,792 + PP_0572 0.52 +0.9
669,844 + PP_0572 0.55 -0.1
669,844 + PP_0572 0.55 +0.6
669,845 - PP_0572 0.55 +0.3
670,035 - PP_0572 0.63 +1.5
670,035 - PP_0572 0.63 -0.9
670,178 - PP_0572 0.69 +0.3
670,178 - PP_0572 0.69 -0.7
670,483 + PP_0572 0.82 +0.1
670,483 + PP_0572 0.82 -0.1
670,483 + PP_0572 0.82 -0.7
670,483 + PP_0572 0.82 -1.4
670,484 - PP_0572 0.82 -0.6
670,738 + +2.5
670,738 + -0.1
670,738 + -2.3
670,739 - -1.3
670,911 + -0.9
670,911 + +0.1
670,911 + -2.0
670,911 + +0.1
670,911 + +0.5
670,911 + +0.5
670,912 - -1.8
670,941 + -0.2
670,941 + +0.3
670,942 - +1.2
671,005 + -0.4
671,006 - -0.4
671,096 + +0.9
671,096 + -1.4
671,097 - +1.7
671,097 - -1.6
671,139 - PP_0573 0.11 +0.9
671,160 + PP_0573 0.12 +0.5
671,160 + PP_0573 0.12 +0.2
671,161 - PP_0573 0.12 +0.8
671,282 + PP_0573 0.19 -0.9
671,282 + PP_0573 0.19 -0.9
671,282 + PP_0573 0.19 -1.2
671,331 - PP_0573 0.22 -1.6
671,331 - PP_0573 0.22 +0.6
671,331 - PP_0573 0.22 -0.3
671,331 - PP_0573 0.22 -0.7
671,370 - PP_0573 0.25 -0.5
671,381 + PP_0573 0.25 +0.1
671,381 + PP_0573 0.25 +0.1
671,381 + PP_0573 0.25 -0.0
671,381 + PP_0573 0.25 +1.0
671,382 - PP_0573 0.25 +0.4
671,382 - PP_0573 0.25 +0.3
671,382 - PP_0573 0.25 +0.1
671,387 + PP_0573 0.26 -1.0
671,388 - PP_0573 0.26 +0.7
671,388 - PP_0573 0.26 +0.3
671,444 + PP_0573 0.29 +1.8
671,445 - PP_0573 0.29 -0.8
671,445 - PP_0573 0.29 +0.6
671,448 + PP_0573 0.29 -0.9
671,448 + PP_0573 0.29 -0.1
671,448 + PP_0573 0.29 -0.3
671,448 + PP_0573 0.29 -0.1
671,448 + PP_0573 0.29 +0.5
671,448 + PP_0573 0.29 -0.5
671,448 + PP_0573 0.29 -0.9
671,449 - PP_0573 0.29 -0.0
671,457 - PP_0573 0.30 -0.5
671,492 + PP_0573 0.32 +1.0
671,493 - PP_0573 0.32 +0.1
671,493 - PP_0573 0.32 +1.5
671,558 + PP_0573 0.35 +0.7
671,559 - PP_0573 0.36 +0.7
671,559 - PP_0573 0.36 -0.3
671,807 + +0.5
671,807 + PP_0573 0.50 -1.0
671,811 - PP_0573 0.50 -0.4
671,825 + PP_0573 0.51 +0.4
671,826 - PP_0573 0.51 -0.0
671,826 - PP_0573 0.51 -0.5
671,826 - PP_0573 0.51 +0.1
671,835 - PP_0573 0.52 -0.5
671,835 - PP_0573 0.52 -1.2
671,904 + PP_0573 0.56 +0.2
671,904 + PP_0573 0.56 -0.6
671,904 + PP_0573 0.56 +0.3
671,905 - PP_0573 0.56 +0.1

Or see this region's nucleotide sequence