Strain Fitness in Pseudomonas putida KT2440 around PP_0559

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0558 and PP_0559 are separated by 17 nucleotidesPP_0559 and PP_0560 are separated by 99 nucleotidesPP_0560 and PP_0561 are separated by 179 nucleotides PP_0558: PP_0558 - acetyl-CoA carboxylase - biotin carboxylase subunit, at 648,322 to 649,677 _0558 PP_0559: PP_0559 - acetyl-CoA carboxylase - biotin carboxyl carrier subunit, at 649,695 to 650,156 _0559 PP_0560: PP_0560 - 3-dehydroquinate dehydratase 1, type II, at 650,256 to 650,711 _0560 PP_0561: PP_0561 - thiol/disulfide interchange protein 1, at 650,891 to 652,663 _0561 Position (kb) 649 650 651Strain fitness (log2 ratio) -1 0 1at 650.767 kb on - strandat 650.831 kb on - strandat 650.831 kb on - strandat 650.846 kb on + strandat 650.893 kb on - strandat 650.894 kb on + strandat 650.894 kb on + strandat 650.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
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650,767 - -1.7
650,831 - -1.0
650,831 - -0.0
650,846 + +0.5
650,893 - +1.5
650,894 + -0.3
650,894 + +0.3
650,948 + +0.5

Or see this region's nucleotide sequence