Strain Fitness in Pseudomonas putida KT2440 around PP_0370

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0369 and PP_0370 are separated by 124 nucleotidesPP_0370 and PP_0371 are separated by 340 nucleotides PP_0369: PP_0369 - putative diguanylate cyclase, at 447,422 to 448,705 _0369 PP_0370: PP_0370 - Acyl-CoA dehydrogenase family protein, at 448,830 to 450,608 _0370 PP_0371: PP_0371 - Transcriptional regulator, LysR family, at 450,949 to 451,872 _0371 Position (kb) 448 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 447.938 kb on + strand, within PP_0369at 447.939 kb on - strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.981 kb on - strand, within PP_0369at 447.981 kb on - strand, within PP_0369at 448.073 kb on - strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.216 kb on + strand, within PP_0369at 448.216 kb on + strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.349 kb on + strand, within PP_0369at 448.448 kb on + strand, within PP_0369at 448.625 kb on + strandat 448.625 kb on + strandat 448.625 kb on + strandat 448.626 kb on - strandat 448.773 kb on + strandat 448.816 kb on - strandat 448.839 kb on + strandat 448.840 kb on - strandat 448.841 kb on + strandat 449.079 kb on + strand, within PP_0370at 449.145 kb on - strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.624 kb on + strand, within PP_0370at 449.659 kb on - strand, within PP_0370at 449.712 kb on + strand, within PP_0370at 449.712 kb on + strand, within PP_0370at 449.713 kb on - strand, within PP_0370at 449.713 kb on - strand, within PP_0370at 449.782 kb on - strand, within PP_0370at 449.782 kb on - strand, within PP_0370at 449.928 kb on + strand, within PP_0370at 449.928 kb on + strand, within PP_0370at 449.929 kb on - strand, within PP_0370at 449.929 kb on - strand, within PP_0370at 449.929 kb on - strand, within PP_0370at 449.929 kb on - strand, within PP_0370at 449.958 kb on + strand, within PP_0370at 449.959 kb on - strand, within PP_0370at 449.959 kb on - strand, within PP_0370at 450.076 kb on + strand, within PP_0370at 450.076 kb on + strand, within PP_0370at 450.093 kb on + strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.094 kb on - strand, within PP_0370at 450.150 kb on + strand, within PP_0370at 450.150 kb on + strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.151 kb on - strand, within PP_0370at 450.158 kb on + strand, within PP_0370at 450.158 kb on + strand, within PP_0370at 450.195 kb on - strand, within PP_0370at 450.219 kb on + strand, within PP_0370at 450.219 kb on + strand, within PP_0370at 450.220 kb on - strand, within PP_0370at 450.220 kb on - strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.222 kb on + strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.223 kb on - strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.340 kb on + strand, within PP_0370at 450.394 kb on - strand, within PP_0370at 450.411 kb on + strand, within PP_0370at 450.412 kb on - strand, within PP_0370at 450.420 kb on + strand, within PP_0370at 450.421 kb on - strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.426 kb on + strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.427 kb on - strand, within PP_0370at 450.483 kb on + strandat 450.513 kb on + strandat 450.513 kb on + strandat 450.513 kb on + strandat 450.583 kb on - strandat 450.664 kb on + strandat 450.665 kb on - strandat 450.671 kb on + strandat 450.672 kb on - strandat 450.682 kb on - strandat 450.708 kb on + strandat 450.708 kb on + strandat 450.708 kb on + strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.709 kb on - strandat 450.732 kb on - strandat 450.744 kb on - strandat 451.060 kb on + strand, within PP_0371at 451.060 kb on + strand, within PP_0371at 451.203 kb on + strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.433 kb on + strand, within PP_0371at 451.434 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
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447,938 + PP_0369 0.40 +0.0
447,939 - PP_0369 0.40 -1.9
447,980 + PP_0369 0.43 +0.2
447,980 + PP_0369 0.43 -0.5
447,980 + PP_0369 0.43 +0.0
447,981 - PP_0369 0.44 -0.3
447,981 - PP_0369 0.44 -0.4
448,073 - PP_0369 0.51 -0.8
448,136 + PP_0369 0.56 -0.6
448,136 + PP_0369 0.56 -1.1
448,136 + PP_0369 0.56 -1.2
448,216 + PP_0369 0.62 -0.3
448,216 + PP_0369 0.62 -0.3
448,217 - PP_0369 0.62 +0.8
448,217 - PP_0369 0.62 +0.4
448,217 - PP_0369 0.62 +0.5
448,220 + PP_0369 0.62 -0.4
448,220 + PP_0369 0.62 +0.7
448,220 + PP_0369 0.62 +0.7
448,221 - PP_0369 0.62 -0.6
448,221 - PP_0369 0.62 -0.6
448,221 - PP_0369 0.62 -1.5
448,221 - PP_0369 0.62 +0.7
448,349 + PP_0369 0.72 -0.4
448,448 + PP_0369 0.80 -0.5
448,625 + -0.3
448,625 + +1.4
448,625 + -0.9
448,626 - -0.3
448,773 + +0.6
448,816 - -0.6
448,839 + -0.3
448,840 - +0.5
448,841 + -0.4
449,079 + PP_0370 0.14 -0.0
449,145 - PP_0370 0.18 +0.2
449,295 + PP_0370 0.26 +0.4
449,295 + PP_0370 0.26 +0.3
449,295 + PP_0370 0.26 -0.1
449,295 + PP_0370 0.26 +1.0
449,295 + PP_0370 0.26 -0.2
449,295 + PP_0370 0.26 -0.0
449,295 + PP_0370 0.26 -0.2
449,295 + PP_0370 0.26 +0.2
449,296 - PP_0370 0.26 +0.4
449,296 - PP_0370 0.26 -0.1
449,296 - PP_0370 0.26 +0.0
449,296 - PP_0370 0.26 +0.8
449,296 - PP_0370 0.26 -1.1
449,296 - PP_0370 0.26 -0.4
449,296 - PP_0370 0.26 -0.3
449,296 - PP_0370 0.26 -1.3
449,296 - PP_0370 0.26 +0.1
449,397 + PP_0370 0.32 -0.4
449,397 + PP_0370 0.32 +0.2
449,397 + PP_0370 0.32 -1.2
449,398 - PP_0370 0.32 +1.3
449,398 - PP_0370 0.32 +1.0
449,398 - PP_0370 0.32 -1.3
449,398 - PP_0370 0.32 -0.0
449,624 + PP_0370 0.45 -0.3
449,659 - PP_0370 0.47 +0.4
449,712 + PP_0370 0.50 +0.1
449,712 + PP_0370 0.50 +0.7
449,713 - PP_0370 0.50 -1.5
449,713 - PP_0370 0.50 -0.2
449,782 - PP_0370 0.54 +0.2
449,782 - PP_0370 0.54 -0.9
449,928 + PP_0370 0.62 -0.3
449,928 + PP_0370 0.62 -0.8
449,929 - PP_0370 0.62 +0.5
449,929 - PP_0370 0.62 +1.0
449,929 - PP_0370 0.62 -0.9
449,929 - PP_0370 0.62 +1.0
449,958 + PP_0370 0.63 -0.9
449,959 - PP_0370 0.63 +0.7
449,959 - PP_0370 0.63 +0.9
450,076 + PP_0370 0.70 +1.6
450,076 + PP_0370 0.70 -0.2
450,093 + PP_0370 0.71 +0.8
450,094 - PP_0370 0.71 +0.2
450,094 - PP_0370 0.71 +0.5
450,094 - PP_0370 0.71 -0.5
450,150 + PP_0370 0.74 +0.1
450,150 + PP_0370 0.74 +0.6
450,151 - PP_0370 0.74 +1.2
450,151 - PP_0370 0.74 +0.7
450,151 - PP_0370 0.74 -2.4
450,158 + PP_0370 0.75 -0.4
450,158 + PP_0370 0.75 +0.4
450,195 - PP_0370 0.77 -0.5
450,219 + PP_0370 0.78 -0.2
450,219 + PP_0370 0.78 -0.3
450,220 - PP_0370 0.78 -0.0
450,220 - PP_0370 0.78 +0.8
450,222 + PP_0370 0.78 +0.4
450,222 + PP_0370 0.78 +0.5
450,222 + PP_0370 0.78 +1.0
450,222 + PP_0370 0.78 +0.6
450,223 - PP_0370 0.78 -0.7
450,223 - PP_0370 0.78 -0.8
450,223 - PP_0370 0.78 +1.1
450,223 - PP_0370 0.78 +0.7
450,340 + PP_0370 0.85 +1.6
450,340 + PP_0370 0.85 +0.1
450,340 + PP_0370 0.85 -3.1
450,394 - PP_0370 0.88 +1.1
450,411 + PP_0370 0.89 -0.6
450,412 - PP_0370 0.89 -0.5
450,420 + PP_0370 0.89 +0.5
450,421 - PP_0370 0.89 +0.9
450,426 + PP_0370 0.90 -0.0
450,426 + PP_0370 0.90 +0.4
450,426 + PP_0370 0.90 +0.6
450,426 + PP_0370 0.90 -0.3
450,426 + PP_0370 0.90 -0.0
450,426 + PP_0370 0.90 -0.3
450,427 - PP_0370 0.90 -0.7
450,427 - PP_0370 0.90 -1.1
450,427 - PP_0370 0.90 -1.0
450,427 - PP_0370 0.90 +0.4
450,483 + +1.8
450,513 + -0.7
450,513 + -0.6
450,513 + -1.1
450,583 - +0.5
450,664 + +0.3
450,665 - -2.3
450,671 + -1.3
450,672 - +0.4
450,682 - -0.9
450,708 + +1.2
450,708 + +0.0
450,708 + -0.8
450,709 - -0.2
450,709 - +0.9
450,709 - +1.4
450,709 - -0.6
450,709 - -0.7
450,709 - +0.7
450,709 - +0.2
450,709 - -0.3
450,732 - +0.6
450,744 - +0.3
451,060 + PP_0371 0.12 -0.3
451,060 + PP_0371 0.12 -0.1
451,203 + PP_0371 0.27 -0.8
451,204 - PP_0371 0.28 +0.4
451,204 - PP_0371 0.28 +0.5
451,204 - PP_0371 0.28 +0.1
451,204 - PP_0371 0.28 -0.2
451,392 - PP_0371 0.48 +0.1
451,392 - PP_0371 0.48 -0.7
451,433 + PP_0371 0.52 -0.4
451,434 - PP_0371 0.52 -0.8
451,583 - PP_0371 0.69 -0.2
451,583 - PP_0371 0.69 -1.1

Or see this region's nucleotide sequence