Strain Fitness in Pseudomonas putida KT2440 around PP_0205

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_t74 and PP_0204 are separated by 213 nucleotidesPP_0204 and PP_0205 overlap by 4 nucleotidesPP_0205 and PP_0206 are separated by 62 nucleotidesPP_0206 and PP_0207 are separated by 119 nucleotides PP_t74: PP_t74 - tRNA-Arg, at 255,279 to 255,355 _t74 PP_0204: PP_0204 - Transcriptional regulator, GntR family, at 255,569 to 256,318 _0204 PP_0205: PP_0205 - putative Oxidoreductase, at 256,315 to 258,039 _0205 PP_0206: PP_0206 - Ferredoxin, 4Fe-4S, at 258,102 to 258,347 _0206 PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873 _0207 Position (kb) 256 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 255.372 kb on - strandat 255.477 kb on - strandat 255.507 kb on + strandat 255.517 kb on - strandat 255.517 kb on - strandat 255.539 kb on + strandat 255.598 kb on - strandat 255.605 kb on + strandat 255.605 kb on + strandat 255.605 kb on + strandat 255.606 kb on - strandat 255.606 kb on - strandat 255.607 kb on + strandat 255.628 kb on - strandat 255.649 kb on + strand, within PP_0204at 255.653 kb on + strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.664 kb on + strand, within PP_0204at 255.665 kb on - strand, within PP_0204at 255.665 kb on - strand, within PP_0204at 255.823 kb on + strand, within PP_0204at 255.946 kb on + strand, within PP_0204at 255.947 kb on - strand, within PP_0204at 255.947 kb on - strand, within PP_0204at 256.253 kb on + strandat 256.253 kb on + strandat 256.254 kb on - strandat 256.254 kb on - strandat 256.272 kb on + strandat 256.336 kb on + strandat 256.337 kb on - strandat 256.337 kb on - strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.462 kb on - strandat 256.462 kb on - strandat 256.464 kb on + strandat 256.464 kb on + strandat 256.464 kb on + strandat 256.465 kb on - strandat 256.523 kb on - strand, within PP_0205at 256.523 kb on - strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.583 kb on - strand, within PP_0205at 256.583 kb on - strand, within PP_0205at 256.739 kb on - strand, within PP_0205at 256.739 kb on - strand, within PP_0205at 256.934 kb on - strand, within PP_0205at 256.978 kb on + strand, within PP_0205at 256.979 kb on - strand, within PP_0205at 256.991 kb on - strand, within PP_0205at 256.991 kb on - strand, within PP_0205at 257.053 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.099 kb on - strand, within PP_0205at 257.141 kb on - strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.425 kb on + strand, within PP_0205at 257.426 kb on - strand, within PP_0205at 257.426 kb on - strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.478 kb on + strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.629 kb on + strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.656 kb on + strand, within PP_0205at 257.854 kb on + strand, within PP_0205at 258.240 kb on - strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.442 kb on + strandat 258.443 kb on - strandat 258.444 kb on + strandat 258.537 kb on + strandat 258.538 kb on - strandat 258.538 kb on - strandat 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.908 kb on + strand, within PP_0207

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
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255,372 - -1.8
255,477 - -1.3
255,507 + -0.7
255,517 - -0.1
255,517 - -0.5
255,539 + -1.6
255,598 - +0.0
255,605 + +2.5
255,605 + -0.6
255,605 + -0.0
255,606 - -0.3
255,606 - -1.6
255,607 + -0.7
255,628 - +0.1
255,649 + PP_0204 0.11 -2.3
255,653 + PP_0204 0.11 -2.3
255,654 - PP_0204 0.11 +0.4
255,654 - PP_0204 0.11 +0.6
255,654 - PP_0204 0.11 -1.2
255,664 + PP_0204 0.13 +0.0
255,665 - PP_0204 0.13 -0.4
255,665 - PP_0204 0.13 -1.2
255,823 + PP_0204 0.34 -1.0
255,946 + PP_0204 0.50 -1.2
255,947 - PP_0204 0.50 +0.4
255,947 - PP_0204 0.50 +0.1
256,253 + +0.2
256,253 + +0.2
256,254 - +1.0
256,254 - -0.7
256,272 + +0.6
256,336 + -0.2
256,337 - -0.0
256,337 - +0.8
256,461 + +1.3
256,461 + -0.7
256,461 + +0.1
256,461 + -0.5
256,461 + -0.4
256,461 + -0.6
256,461 + -0.1
256,461 + -0.3
256,461 + -0.1
256,462 - +0.1
256,462 - +0.1
256,464 + +0.5
256,464 + -0.1
256,464 + +0.1
256,465 - +0.8
256,523 - PP_0205 0.12 -0.0
256,523 - PP_0205 0.12 -0.7
256,582 + PP_0205 0.15 +0.3
256,582 + PP_0205 0.15 -0.3
256,582 + PP_0205 0.15 +1.2
256,583 - PP_0205 0.16 -0.9
256,583 - PP_0205 0.16 +0.1
256,739 - PP_0205 0.25 -0.3
256,739 - PP_0205 0.25 -1.0
256,934 - PP_0205 0.36 -0.3
256,978 + PP_0205 0.38 -1.8
256,979 - PP_0205 0.38 +0.3
256,991 - PP_0205 0.39 -0.5
256,991 - PP_0205 0.39 +1.1
257,053 + PP_0205 0.43 +1.0
257,074 + PP_0205 0.44 +0.7
257,074 + PP_0205 0.44 -0.0
257,074 + PP_0205 0.44 -0.9
257,074 + PP_0205 0.44 -1.1
257,099 - PP_0205 0.45 -0.1
257,141 - PP_0205 0.48 -0.4
257,340 + PP_0205 0.59 -1.9
257,340 + PP_0205 0.59 +0.4
257,340 + PP_0205 0.59 -0.3
257,340 + PP_0205 0.59 -2.3
257,340 + PP_0205 0.59 -3.0
257,340 + PP_0205 0.59 -0.2
257,340 + PP_0205 0.59 -0.7
257,341 - PP_0205 0.59 +1.3
257,341 - PP_0205 0.59 -0.2
257,341 - PP_0205 0.59 +0.3
257,341 - PP_0205 0.59 -0.2
257,341 - PP_0205 0.59 +0.3
257,425 + PP_0205 0.64 +1.2
257,426 - PP_0205 0.64 +0.0
257,426 - PP_0205 0.64 +0.3
257,461 + PP_0205 0.66 +0.7
257,461 + PP_0205 0.66 -1.1
257,461 + PP_0205 0.66 +0.6
257,478 + PP_0205 0.67 -1.2
257,479 - PP_0205 0.67 +0.2
257,479 - PP_0205 0.67 +0.7
257,482 + PP_0205 0.68 -0.4
257,482 + PP_0205 0.68 -0.2
257,482 + PP_0205 0.68 -0.4
257,482 + PP_0205 0.68 -0.3
257,483 - PP_0205 0.68 -1.4
257,483 - PP_0205 0.68 +0.5
257,483 - PP_0205 0.68 -1.0
257,483 - PP_0205 0.68 -0.5
257,515 + PP_0205 0.70 -0.7
257,515 + PP_0205 0.70 +2.5
257,516 - PP_0205 0.70 +0.3
257,516 - PP_0205 0.70 -0.7
257,629 + PP_0205 0.76 -1.1
257,630 - PP_0205 0.76 -1.3
257,630 - PP_0205 0.76 -1.7
257,656 + PP_0205 0.78 -1.3
257,854 + PP_0205 0.89 -0.6
258,240 - PP_0206 0.56 +0.7
258,252 + PP_0206 0.61 +1.6
258,252 + PP_0206 0.61 +0.9
258,253 - PP_0206 0.61 +0.6
258,253 - PP_0206 0.61 -0.3
258,253 - PP_0206 0.61 -0.2
258,442 + -0.0
258,443 - +0.7
258,444 + +1.0
258,537 + -0.9
258,538 - +0.0
258,538 - -0.1
258,624 - PP_0207 0.11 +0.2
258,624 - PP_0207 0.11 -0.1
258,624 - PP_0207 0.11 -1.1
258,624 - PP_0207 0.11 +0.6
258,624 - PP_0207 0.11 +1.5
258,644 + PP_0207 0.13 +0.2
258,644 + PP_0207 0.13 -1.4
258,659 + PP_0207 0.14 -0.4
258,659 + PP_0207 0.14 -0.0
258,660 - PP_0207 0.14 +0.9
258,660 - PP_0207 0.14 -0.9
258,660 - PP_0207 0.14 -0.0
258,908 + PP_0207 0.31 -2.5

Or see this region's nucleotide sequence