Experiment: Koxy_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yajG and bolA are separated by 304 nucleotides bolA and tig are separated by 343 nucleotides tig and clpP are separated by 245 nucleotides clpP and clpX are separated by 125 nucleotides
b0434: yajG - putative polymerase/proteinase (VIMSS), at 452,813 to 453,391
yajG
b0435: bolA - possible regulator of murein genes (VIMSS), at 453,696 to 454,013
bolA
b0436: tig - trigger factor (NCBI), at 454,357 to 455,655
tig
b0437: clpP - ATP-dependent Clp protease proteolytic subunit (NCBI), at 455,901 to 456,524
clpP
b0438: clpX - ATP-dependent protease ATP-binding subunit (NCBI), at 456,650 to 457,924
clpX
Position (kb)
454
455
456 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 453.478 kb on - strand at 453.486 kb on - strand at 453.486 kb on - strand at 453.538 kb on + strand at 453.647 kb on + strand at 453.668 kb on + strand at 453.668 kb on + strand at 453.703 kb on + strand at 453.703 kb on + strand at 453.705 kb on - strand at 453.705 kb on - strand at 453.708 kb on - strand at 453.765 kb on + strand, within bolA at 453.794 kb on - strand, within bolA at 453.794 kb on - strand, within bolA at 453.794 kb on - strand, within bolA at 453.832 kb on - strand, within bolA at 453.835 kb on + strand, within bolA at 453.835 kb on + strand, within bolA at 453.929 kb on + strand, within bolA at 453.937 kb on - strand, within bolA at 453.937 kb on - strand, within bolA at 453.939 kb on + strand, within bolA at 453.939 kb on + strand, within bolA at 453.957 kb on + strand, within bolA at 453.996 kb on + strand at 454.039 kb on + strand at 454.128 kb on - strand at 454.177 kb on - strand at 454.177 kb on - strand at 454.207 kb on + strand at 454.264 kb on - strand at 454.299 kb on + strand at 454.299 kb on + strand at 454.302 kb on - strand at 454.334 kb on + strand at 454.334 kb on - strand at 454.334 kb on - strand at 454.386 kb on - strand at 454.387 kb on - strand at 454.452 kb on + strand at 454.452 kb on + strand at 454.452 kb on + strand at 454.460 kb on - strand at 454.460 kb on - strand at 454.543 kb on + strand, within tig at 454.543 kb on + strand, within tig at 454.561 kb on + strand, within tig at 454.578 kb on - strand, within tig at 454.747 kb on + strand, within tig at 454.752 kb on + strand, within tig at 454.776 kb on + strand, within tig at 454.776 kb on + strand, within tig at 454.776 kb on + strand, within tig at 454.924 kb on + strand, within tig at 454.924 kb on + strand, within tig at 454.932 kb on - strand, within tig at 455.024 kb on + strand, within tig at 455.024 kb on + strand, within tig at 455.089 kb on - strand, within tig at 455.089 kb on - strand, within tig at 455.128 kb on + strand, within tig at 455.128 kb on + strand, within tig at 455.128 kb on + strand, within tig at 455.217 kb on + strand, within tig at 455.314 kb on - strand, within tig at 455.314 kb on - strand, within tig at 455.439 kb on + strand, within tig at 455.467 kb on + strand, within tig at 455.563 kb on - strand at 455.563 kb on - strand at 455.812 kb on - strand at 455.824 kb on - strand at 455.827 kb on - strand at 455.852 kb on + strand at 455.852 kb on + strand at 455.921 kb on + strand at 455.958 kb on - strand at 456.018 kb on - strand, within clpP at 456.053 kb on - strand, within clpP at 456.141 kb on + strand, within clpP at 456.142 kb on - strand, within clpP at 456.162 kb on + strand, within clpP at 456.162 kb on - strand, within clpP at 456.162 kb on - strand, within clpP at 456.168 kb on + strand, within clpP at 456.170 kb on + strand, within clpP at 456.217 kb on - strand, within clpP at 456.220 kb on - strand, within clpP at 456.222 kb on - strand, within clpP at 456.222 kb on - strand, within clpP at 456.320 kb on - strand, within clpP at 456.327 kb on - strand, within clpP at 456.345 kb on + strand, within clpP at 456.383 kb on - strand, within clpP at 456.396 kb on + strand, within clpP at 456.422 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.439 kb on - strand, within clpP at 456.480 kb on + strand at 456.504 kb on + strand at 456.541 kb on + strand at 456.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Koxy_10 remove 453,478 - -1.0 453,486 - -1.2 453,486 - -0.6 453,538 + -0.6 453,647 + +0.4 453,668 + -0.5 453,668 + +0.2 453,703 + +1.2 453,703 + -0.8 453,705 - +0.0 453,705 - +0.3 453,708 - +1.2 453,765 + bolA b0435 0.22 -0.3 453,794 - bolA b0435 0.31 +0.4 453,794 - bolA b0435 0.31 -0.1 453,794 - bolA b0435 0.31 -0.8 453,832 - bolA b0435 0.43 +0.7 453,835 + bolA b0435 0.44 -0.4 453,835 + bolA b0435 0.44 -1.1 453,929 + bolA b0435 0.73 -0.1 453,937 - bolA b0435 0.76 +0.0 453,937 - bolA b0435 0.76 -0.0 453,939 + bolA b0435 0.76 +0.6 453,939 + bolA b0435 0.76 -0.1 453,957 + bolA b0435 0.82 -0.6 453,996 + -0.7 454,039 + +0.1 454,128 - -0.2 454,177 - -1.3 454,177 - +0.0 454,207 + +0.6 454,264 - -0.5 454,299 + -1.2 454,299 + -0.4 454,302 - -0.8 454,334 + -0.4 454,334 - +1.1 454,334 - -0.5 454,386 - -0.2 454,387 - -0.9 454,452 + +1.2 454,452 + -0.3 454,452 + -0.5 454,460 - +0.4 454,460 - -0.2 454,543 + tig b0436 0.14 -0.6 454,543 + tig b0436 0.14 -0.6 454,561 + tig b0436 0.16 +1.7 454,578 - tig b0436 0.17 +0.0 454,747 + tig b0436 0.30 -0.4 454,752 + tig b0436 0.30 -1.1 454,776 + tig b0436 0.32 -1.3 454,776 + tig b0436 0.32 -0.5 454,776 + tig b0436 0.32 -1.0 454,924 + tig b0436 0.44 -0.9 454,924 + tig b0436 0.44 -0.8 454,932 - tig b0436 0.44 +0.2 455,024 + tig b0436 0.51 +0.0 455,024 + tig b0436 0.51 +0.1 455,089 - tig b0436 0.56 -1.3 455,089 - tig b0436 0.56 -1.6 455,128 + tig b0436 0.59 -0.2 455,128 + tig b0436 0.59 -0.8 455,128 + tig b0436 0.59 -0.7 455,217 + tig b0436 0.66 -0.6 455,314 - tig b0436 0.74 -0.0 455,314 - tig b0436 0.74 -0.7 455,439 + tig b0436 0.83 -0.8 455,467 + tig b0436 0.85 +0.5 455,563 - +1.3 455,563 - -0.5 455,812 - -0.9 455,824 - +0.4 455,827 - +0.7 455,852 + -0.3 455,852 + +0.7 455,921 + +0.0 455,958 - -0.9 456,018 - clpP b0437 0.19 -0.0 456,053 - clpP b0437 0.24 -0.1 456,141 + clpP b0437 0.38 -0.1 456,142 - clpP b0437 0.39 -0.2 456,162 + clpP b0437 0.42 +0.5 456,162 - clpP b0437 0.42 -0.3 456,162 - clpP b0437 0.42 +1.3 456,168 + clpP b0437 0.43 -0.5 456,170 + clpP b0437 0.43 -0.9 456,217 - clpP b0437 0.51 +2.0 456,220 - clpP b0437 0.51 +1.0 456,222 - clpP b0437 0.51 +0.7 456,222 - clpP b0437 0.51 -2.8 456,320 - clpP b0437 0.67 +0.5 456,327 - clpP b0437 0.68 -0.6 456,345 + clpP b0437 0.71 +0.0 456,383 - clpP b0437 0.77 +0.4 456,396 + clpP b0437 0.79 +0.2 456,422 - clpP b0437 0.83 +0.8 456,429 - clpP b0437 0.85 +0.2 456,429 - clpP b0437 0.85 +0.2 456,429 - clpP b0437 0.85 +0.6 456,429 - clpP b0437 0.85 -0.2 456,439 - clpP b0437 0.86 -0.2 456,480 + -0.5 456,504 + -2.5 456,541 + -0.3 456,610 + -0.4
Or see this region's nucleotide sequence