Strain Fitness in Pseudomonas putida KT2440 around PP_5402

Experiment: microaerobic M9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	microaerobic M9
6,158,572	+		PP_5739	0.67	-0.2
6,158,572	+		PP_5739	0.67	-0.2
6,158,612	+		PP_5739	0.81	-0.1
6,158,612	+		PP_5739	0.81	+0.8
6,158,685	+				-0.8
6,159,079	+				+1.4
6,159,079	+				-0.4
6,159,079	+				-0.9
6,159,079	+				+0.7
6,159,215	+				+0.2
6,159,227	+				+1.1
6,159,306	+				+1.1
6,159,366	+				-0.7
6,159,414	+				-0.5
6,159,446	+				+0.4
6,159,446	+				-0.4
6,159,458	+				+0.1
6,159,458	+				-0.5
6,159,473	+				+0.4
6,159,473	+				+0.8
6,159,536	+				+1.0
6,159,536	+				-0.4
6,159,591	+				+0.8
6,159,594	+				+0.9
6,159,594	+				+0.1
6,159,594	+				-2.1
6,159,594	+				-1.4
6,159,594	+				-0.5
6,159,594	+				-0.4
6,159,594	+				-2.5
6,159,594	+				+0.5
6,159,595	-				-0.8
6,159,595	-				+0.7
6,159,595	-				+0.7
6,159,595	-				-2.6
6,159,595	-				+0.9
6,159,621	+		PP_5402	0.11	-1.1
6,159,621	+		PP_5402	0.11	+0.1
6,159,621	+		PP_5402	0.11	-0.0
6,159,621	+		PP_5402	0.11	-1.0
6,159,622	-		PP_5402	0.12	-0.9
6,159,622	-		PP_5402	0.12	+0.1
6,159,622	-		PP_5402	0.12	-0.1
6,159,622	-		PP_5402	0.12	+0.8
6,159,622	-		PP_5402	0.12	-0.9
6,159,695	+		PP_5402	0.21	-0.8
6,159,774	+		PP_5402	0.31	-0.3
6,159,774	+		PP_5402	0.31	-0.3
6,159,774	+		PP_5402	0.31	-0.7
6,159,774	+		PP_5402	0.31	-0.2
6,159,775	-		PP_5402	0.31	-0.1
6,159,794	+		PP_5402	0.33	-0.1
6,159,794	+		PP_5402	0.33	-1.5
6,159,795	-		PP_5402	0.33	-0.2
6,159,845	+		PP_5402	0.40	-1.8
6,159,855	-		PP_5402	0.41	-2.1
6,160,023	-		PP_5402	0.62	-1.1
6,160,032	+		PP_5402	0.63	+0.4
6,160,032	+		PP_5402	0.63	-0.4
6,160,032	+		PP_5402	0.63	-0.2
6,160,033	-		PP_5402	0.64	-0.1
6,160,064	+		PP_5402	0.68	+0.2
6,160,064	+		PP_5402	0.68	-0.4
6,160,064	+		PP_5402	0.68	+0.2
6,160,065	-		PP_5402	0.68	-0.2
6,160,065	-		PP_5402	0.68	-1.8
6,160,065	-		PP_5402	0.68	-0.5
6,160,065	-		PP_5402	0.68	-0.4
6,160,065	-		PP_5402	0.68	-0.8
6,160,065	-		PP_5402	0.68	+1.0
6,160,068	+		PP_5402	0.68	+0.4
6,160,068	+		PP_5402	0.68	-2.1
6,160,068	+		PP_5402	0.68	+0.2
6,160,068	+		PP_5402	0.68	-0.7
6,160,068	+		PP_5402	0.68	-1.9
6,160,068	+		PP_5402	0.68	-0.6
6,160,069	-		PP_5402	0.68	-1.7
6,160,069	-		PP_5402	0.68	-1.1
6,160,069	-		PP_5402	0.68	+0.1
6,160,069	-		PP_5402	0.68	+0.2
6,160,069	-		PP_5402	0.68	+0.4
6,160,098	+		PP_5402	0.72	-0.5
6,160,098	+		PP_5402	0.72	-0.2
6,160,098	+		PP_5402	0.72	-1.2
6,160,120	+		PP_5402	0.75	-0.0
6,160,120	+		PP_5402	0.75	+0.2
6,160,120	+		PP_5402	0.75	-1.3
6,160,121	-		PP_5402	0.75	-1.0
6,160,359	+				+0.0
6,160,388	+				-0.3
6,160,389	-				+0.3
6,160,389	-				+0.3
6,160,389	-				+0.2
6,160,441	-				-1.3
6,160,492	+				+0.4
6,160,493	-				+1.0
6,160,499	-				+0.6
6,160,504	+				-0.3
6,160,526	+				-0.4
6,160,526	+				-0.1
6,160,526	+				+1.5
6,160,526	+				-0.7
6,160,526	+				+0.8
6,160,526	+				+1.4
6,160,527	-				-0.9
6,160,527	-				-0.5
6,160,527	-				-1.4
6,160,527	-				-0.4
6,160,527	-				+1.6
6,160,527	-				-1.6
6,160,607	+		PP_5740	0.12	+1.1
6,160,607	+		PP_5740	0.12	+0.9
6,160,650	+		PP_5740	0.19	-0.9
6,160,651	-		PP_5740	0.19	+1.0
6,160,651	-		PP_5740	0.19	+0.4
6,160,651	-		PP_5740	0.19	+1.0
6,160,671	+		PP_5740	0.22	-0.2
6,160,671	+		PP_5740	0.22	-0.0
6,160,671	+		PP_5740	0.22	-0.4
6,160,671	+		PP_5740	0.22	-0.3
6,160,671	+		PP_5740	0.22	+0.4
6,160,672	-		PP_5740	0.22	+0.1
6,160,672	-		PP_5740	0.22	+0.2
6,160,672	-		PP_5740	0.22	-1.0
6,160,682	-		PP_5740	0.24	+1.2
6,160,705	-		PP_5740	0.27	+0.4
6,160,705	-		PP_5740	0.27	+1.1
6,160,720	+		PP_5740	0.29	+0.1
6,160,720	+		PP_5740	0.29	-1.3
6,160,720	+		PP_5740	0.29	+0.4
6,160,721	-		PP_5740	0.30	-0.2
6,160,721	-		PP_5740	0.30	-0.2
6,160,721	-		PP_5740	0.30	-0.5
6,160,835	-		PP_5740	0.47	-0.2
6,160,865	+		PP_5740	0.51	-0.0
6,160,865	+		PP_5740	0.51	+0.3
6,160,865	+		PP_5740	0.51	+0.8
6,160,865	+		PP_5740	0.51	+0.4
6,160,865	+		PP_5740	0.51	+0.5
6,160,865	+		PP_5740	0.51	-0.0
6,160,865	+		PP_5740	0.51	-0.7
6,160,866	-		PP_5740	0.52	-0.2
6,160,866	-		PP_5740	0.52	-1.7
6,160,866	-		PP_5740	0.52	-1.1
6,160,866	-		PP_5740	0.52	+2.1
6,160,866	-		PP_5740	0.52	-0.2
6,160,866	-				+1.1
6,160,866	-		PP_5740	0.52	+0.2
6,160,866	-		PP_5740	0.52	-0.4
6,160,866	-		PP_5740	0.52	-0.6
6,160,962	+		PP_5740	0.66	-0.2
6,160,962	+		PP_5740	0.66	-0.8
6,160,962	+		PP_5740	0.66	-0.2
6,160,963	-		PP_5740	0.66	-0.8
6,160,963	-		PP_5740	0.66	-0.1
6,160,963	-		PP_5740	0.66	-0.6
6,160,976	+		PP_5740	0.68	-0.0
6,160,977	-		PP_5740	0.68	+0.6
6,161,014	+		PP_5740	0.74	-0.6
6,161,015	-		PP_5740	0.74	-0.6
6,161,015	-		PP_5740	0.74	-0.3
6,161,051	+		PP_5740	0.80	-0.4
6,161,051	+		PP_5740	0.80	-0.1
6,161,052	-		PP_5740	0.80	+0.4
6,161,052	-		PP_5740	0.80	-1.9
6,161,094	-		PP_5740	0.86	+0.0
6,161,137	+				-1.2
6,161,137	+				-1.5
6,161,138	-				+0.4
6,161,196	+				+0.5
6,161,196	+				-0.8
6,161,197	-				-0.7
6,161,197	-				+0.0
6,161,197	-				+0.3
6,161,197	-				+0.2
6,161,197	-				+0.2
6,161,200	+				+0.4
6,161,200	+				-0.4
6,161,200	+				+0.6
6,161,200	+				+0.8
6,161,200	+				-0.0
6,161,200	+				-0.6
6,161,200	+				+0.1
6,161,200	+				-0.5
6,161,201	-				-1.7
6,161,201	-				+0.2
6,161,201	-				-0.4
6,161,201	-				-0.5
6,161,274	+		PP_5741	0.11	-0.4
6,161,274	+		PP_5741	0.11	+0.2
6,161,274	+		PP_5741	0.11	-1.0
6,161,302	+		PP_5741	0.20	-0.2
6,161,302	+		PP_5741	0.20	+0.3