Strain Fitness in Pseudomonas putida KT2440 around PP_5380

Experiment: microaerobic M9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	microaerobic M9
6,130,879	+		PP_5379	0.40	+0.3
6,130,880	-		PP_5379	0.41	+0.4
6,130,894	-		PP_5379	0.42	+0.9
6,131,032	-		PP_5379	0.55	+0.7
6,131,041	+		PP_5379	0.55	+0.3
6,131,041	+		PP_5379	0.55	+0.3
6,131,041	+		PP_5379	0.55	-1.1
6,131,041	+		PP_5379	0.55	-1.5
6,131,042	-		PP_5379	0.56	+2.1
6,131,042	-		PP_5379	0.56	-0.2
6,131,042	-		PP_5379	0.56	+0.8
6,131,042	-		PP_5379	0.56	+0.9
6,131,042	-		PP_5379	0.56	-0.2
6,131,042	-		PP_5379	0.56	-2.2
6,131,042	-		PP_5379	0.56	+1.1
6,131,045	+		PP_5379	0.56	-0.5
6,131,045	+		PP_5379	0.56	+0.0
6,131,045	+		PP_5379	0.56	-0.3
6,131,146	+		PP_5379	0.65	-0.9
6,131,146	+		PP_5379	0.65	+0.0
6,131,146	+		PP_5379	0.65	+0.2
6,131,152	+		PP_5379	0.66	+1.0
6,131,153	-		PP_5379	0.66	-0.3
6,131,329	+		PP_5379	0.82	-1.1
6,131,330	-		PP_5379	0.82	+0.8
6,131,330	-		PP_5379	0.82	-0.5
6,131,513	-				-1.0
6,131,534	+				+0.8
6,131,535	-				-0.5
6,131,535	-				-1.0
6,131,535	-				+0.1
6,131,540	+				-0.1
6,131,579	+		PP_5732	0.21	+1.1
6,131,579	+		PP_5732	0.21	-0.3
6,131,580	-		PP_5732	0.22	-0.6
6,131,603	+		PP_5732	0.29	+0.5
6,131,604	-		PP_5732	0.29	-0.7
6,131,604	-		PP_5732	0.29	-0.3
6,131,604	-		PP_5732	0.29	+0.2
6,131,628	-		PP_5732	0.37	+0.3
6,131,651	+		PP_5732	0.44	-0.1
6,131,652	-		PP_5732	0.44	-0.4
6,131,652	-		PP_5732	0.44	-0.7
6,131,741	+		PP_5732	0.72	-1.1
6,131,742	-		PP_5732	0.73	+0.1
6,131,761	+		PP_5732	0.79	-1.1
6,131,761	+		PP_5732	0.79	+0.8
6,131,762	-		PP_5732	0.79	-0.7
6,131,762	-		PP_5732	0.79	-1.4
6,131,884	+				+1.4
6,131,894	+				-1.7
6,131,894	+				+0.9
6,131,894	+				+0.2
6,131,895	-				+0.5
6,131,895	-				+0.4
6,131,895	-				+0.5
6,131,895	-				+0.1
6,131,895	-				-0.4
6,131,907	+				+2.1
6,131,908	-				-1.8
6,131,908	-				+0.3
6,131,943	+				-0.9
6,131,998	+				-0.7
6,131,999	-				-2.5
6,132,096	+		PP_5380	0.13	+2.1
6,132,096	+		PP_5380	0.13	+0.1
6,132,097	-		PP_5380	0.13	-0.3
6,132,107	+		PP_5380	0.13	-0.6
6,132,243	+		PP_5380	0.20	-0.8
6,132,244	-		PP_5380	0.20	-0.4
6,132,244	-		PP_5380	0.20	+0.8
6,132,244	-		PP_5380	0.20	-0.7
6,132,298	+		PP_5380	0.23	-0.6
6,132,298	+		PP_5380	0.23	+1.1
6,132,313	+		PP_5380	0.23	-0.5
6,132,313	+		PP_5380	0.23	+0.8
6,132,314	-		PP_5380	0.23	-0.3
6,132,314	-				-0.7
6,132,314	-		PP_5380	0.23	-0.6
6,132,340	+		PP_5380	0.25	+0.6
6,132,340	+		PP_5380	0.25	-0.4
6,132,340	+		PP_5380	0.25	-0.1
6,132,340	+		PP_5380	0.25	+0.7
6,132,341	-		PP_5380	0.25	-0.7
6,132,341	-		PP_5380	0.25	-0.7
6,132,341	-		PP_5380	0.25	-0.5
6,132,341	-		PP_5380	0.25	+0.9
6,132,341	-		PP_5380	0.25	-1.1
6,132,341	-		PP_5380	0.25	+0.6
6,132,379	+		PP_5380	0.27	-0.1
6,132,380	-		PP_5380	0.27	+0.3
6,132,442	+		PP_5380	0.30	-0.1
6,132,443	-		PP_5380	0.30	-1.0
6,132,443	-		PP_5380	0.30	+0.5
6,132,443	-		PP_5380	0.30	-1.0
6,132,443	-		PP_5380	0.30	+0.5
6,132,745	+		PP_5380	0.45	-0.6
6,132,799	+		PP_5380	0.48	-0.7
6,132,799	+		PP_5380	0.48	-0.0
6,132,799	+		PP_5380	0.48	-0.3
6,132,800	-		PP_5380	0.48	+0.1
6,132,800	-		PP_5380	0.48	-1.5
6,132,800	-		PP_5380	0.48	+0.7
6,132,816	-		PP_5380	0.48	+0.7
6,132,831	+		PP_5380	0.49	+0.8
6,132,867	+		PP_5380	0.51	-0.1
6,132,867	+		PP_5380	0.51	+0.0
6,132,868	-		PP_5380	0.51	-0.7
6,132,868	-		PP_5380	0.51	+0.3
6,132,868	-		PP_5380	0.51	-0.6
6,132,904	-		PP_5380	0.53	-1.0
6,132,904	-		PP_5380	0.53	+0.5
6,133,012	-		PP_5380	0.58	-0.0
6,133,012	-				+2.1
6,133,012	-		PP_5380	0.58	+0.5
6,133,110	+		PP_5380	0.63	-0.2
6,133,111	-		PP_5380	0.63	+0.7
6,133,111	-		PP_5380	0.63	-0.0
6,133,111	-		PP_5380	0.63	+0.2
6,133,116	+		PP_5380	0.63	+1.4
6,133,116	+		PP_5380	0.63	-0.2
6,133,116	+		PP_5380	0.63	-0.7
6,133,116	+		PP_5380	0.63	+1.2
6,133,116	+		PP_5380	0.63	+0.4
6,133,116	+		PP_5380	0.63	-0.1
6,133,117	-		PP_5380	0.63	+0.8
6,133,117	-		PP_5380	0.63	+1.1
6,133,117	-		PP_5380	0.63	-0.4
6,133,117	-		PP_5380	0.63	-1.2
6,133,117	-		PP_5380	0.63	+0.0
6,133,117	-		PP_5380	0.63	+0.9
6,133,122	+		PP_5380	0.64	+0.7
6,133,251	+		PP_5380	0.70	-0.0
6,133,251	+		PP_5380	0.70	+0.9
6,133,251	+		PP_5380	0.70	+0.7
6,133,251	+		PP_5380	0.70	+3.1
6,133,251	+		PP_5380	0.70	-0.2
6,133,252	-		PP_5380	0.70	-0.5
6,133,252	-		PP_5380	0.70	-0.0
6,133,252	-		PP_5380	0.70	+1.8
6,133,252	-		PP_5380	0.70	+0.2
6,133,252	-		PP_5380	0.70	+0.5
6,133,257	+		PP_5380	0.70	-0.9
6,133,257	+		PP_5380	0.70	-0.9
6,133,257	+		PP_5380	0.70	+0.5
6,133,258	-		PP_5380	0.70	+0.3
6,133,258	-		PP_5380	0.70	-0.5
6,133,258	-		PP_5380	0.70	-0.1
6,133,258	-		PP_5380	0.70	+0.5
6,133,335	+		PP_5380	0.74	+0.0
6,133,336	-		PP_5380	0.74	+0.1
6,133,336	-		PP_5380	0.74	-0.3
6,133,336	-		PP_5380	0.74	+0.1
6,133,347	+		PP_5380	0.75	-0.2
6,133,347	+		PP_5380	0.75	-2.5
6,133,347	+		PP_5380	0.75	-1.3
6,133,347	+		PP_5380	0.75	-0.8
6,133,347	+		PP_5380	0.75	-1.2
6,133,348	-		PP_5380	0.75	-2.4
6,133,348	-		PP_5380	0.75	-0.6
6,133,348	-		PP_5380	0.75	-2.5
6,133,348	-		PP_5380	0.75	+1.1
6,133,392	+		PP_5380	0.77	-1.8
6,133,392	+		PP_5380	0.77	-0.1
6,133,392	+		PP_5380	0.77	-0.7
6,133,392	+		PP_5380	0.77	-0.3
6,133,392	+		PP_5380	0.77	+0.9
6,133,392	+		PP_5380	0.77	-3.1
6,133,392	+				+0.8
6,133,392	+		PP_5380	0.77	-0.7
6,133,392	+		PP_5380	0.77	+0.0
6,133,392	+		PP_5380	0.77	-0.5
6,133,392	+		PP_5380	0.77	+1.1
6,133,392	+		PP_5380	0.77	-0.6
6,133,393	-		PP_5380	0.77	-2.3
6,133,393	-		PP_5380	0.77	+0.1
6,133,393	-		PP_5380	0.77	-0.9
6,133,393	-		PP_5380	0.77	+0.8
6,133,393	-		PP_5380	0.77	+2.1
6,133,393	-		PP_5380	0.77	-0.8
6,133,393	-				+1.1
6,133,393	-		PP_5380	0.77	-0.0
6,133,393	-		PP_5380	0.77	+0.6
6,133,431	+		PP_5380	0.79	-0.2
6,133,431	+		PP_5380	0.79	+0.5
6,133,437	+		PP_5380	0.79	+1.1
6,133,437	+		PP_5380	0.79	-1.4
6,133,437	+		PP_5380	0.79	+0.5
6,133,437	+		PP_5380	0.79	-0.1
6,133,437	+		PP_5380	0.79	+0.1
6,133,438	-		PP_5380	0.79	-0.8
6,133,438	-		PP_5380	0.79	+0.2
6,133,467	+		PP_5380	0.81	-0.3
6,133,468	-		PP_5380	0.81	-0.0
6,133,473	+		PP_5380	0.81	+0.1
6,133,473	+		PP_5380	0.81	+0.2
6,133,473	+		PP_5380	0.81	+0.1
6,133,473	+		PP_5380	0.81	-0.6
6,133,473	+		PP_5380	0.81	+0.3
6,133,473	+		PP_5380	0.81	+0.5
6,133,473	+		PP_5380	0.81	+0.4
6,133,473	+		PP_5380	0.81	+0.5
6,133,473	+		PP_5380	0.81	-0.6
6,133,474	-		PP_5380	0.81	-0.8
6,133,474	-		PP_5380	0.81	+0.8
6,133,474	-		PP_5380	0.81	+0.9
6,133,474	-		PP_5380	0.81	-1.7
6,133,474	-		PP_5380	0.81	+0.3
6,133,474	-		PP_5380	0.81	+0.2
6,133,474	-		PP_5380	0.81	-0.8
6,133,474	-		PP_5380	0.81	-1.7
6,133,474	-		PP_5380	0.81	+0.2
6,133,603	+		PP_5380	0.88	-0.3
6,133,663	+				-1.8
6,133,663	+				-0.6
6,133,664	-				-1.2
6,133,664	-				-1.2
6,133,664	-				+0.1
6,133,667	+				-0.0
6,133,667	+				-0.7
6,133,667	+				+0.1
6,133,668	-				-0.0
6,133,668	-				-0.4
6,133,668	-				+0.4
6,133,668	-				-0.4
6,133,668	-				+0.7
6,133,704	+				-0.4
6,133,704	+				-0.3
6,133,796	+				+0.8
6,133,804	+				-0.1
6,133,804	+				+0.1
6,133,858	-				-0.1
6,133,877	-				-0.5
6,133,887	+				+0.7
6,133,997	+				+0.8
6,133,998	-				-1.1
6,134,017	-				+0.3
6,134,026	+				+0.4
6,134,027	-				+1.3
6,134,062	+				-0.8
6,134,115	+		PP_5381	0.26	+0.9
6,134,116	-		PP_5381	0.27	+0.8
6,134,116	-		PP_5381	0.27	+1.3
6,134,116	-		PP_5381	0.27	-0.2
6,134,116	-		PP_5381	0.27	+1.7
6,134,116	-		PP_5381	0.27	-0.8
6,134,219	+		PP_5381	0.67	+0.6
6,134,337	+				+1.3
6,134,337	+				+0.4
6,134,338	-				-2.7
6,134,338	-				-2.0
6,134,338	-				-1.1
6,134,393	+				+2.9
6,134,494	+		PP_5382	0.17	+0.5
6,134,494	+		PP_5382	0.17	+0.0
6,134,495	-		PP_5382	0.17	-1.4
6,134,495	-		PP_5382	0.17	-0.3
6,134,553	+		PP_5382	0.33	-0.3
6,134,554	-		PP_5382	0.33	+2.5
6,134,554	-		PP_5382	0.33	+0.5
6,134,622	+		PP_5382	0.52	+2.1
6,134,622	+		PP_5382	0.52	-0.3
6,134,623	-		PP_5382	0.53	-0.8
6,134,623	-		PP_5382	0.53	+0.4
6,134,698	+		PP_5382	0.73	+0.5
6,134,699	-		PP_5382	0.74	-0.5
6,134,707	+		PP_5382	0.76	+2.1
6,134,708	-		PP_5382	0.76	-0.6
6,134,708	-		PP_5382	0.76	+2.7
6,134,829	-				+0.7