Strain Fitness in Pseudomonas putida KT2440 around PP_0712

Experiment: microaerobic M9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0710 and PP_0711 are separated by 211 nucleotidesPP_0711 and PP_0712 are separated by 106 nucleotidesPP_0712 and PP_0713 are separated by 36 nucleotides PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598 _0710 PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430 _0711 PP_0712: PP_0712 - polyphosphate kinase 2, at 827,537 to 828,352 _0712 PP_0713: PP_0713 - Kef-type potassium/proton antiporter, CPA2 family, at 828,389 to 829,585 _0713 Position (kb) 827 828 829Strain fitness (log2 ratio) -1 0 1 2at 826.777 kb on + strandat 826.778 kb on - strandat 826.853 kb on + strandat 826.955 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.380 kb on - strandat 827.410 kb on + strandat 827.410 kb on + strandat 827.428 kb on + strandat 827.429 kb on - strandat 827.495 kb on - strandat 827.495 kb on - strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.518 kb on + strandat 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.641 kb on - strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.763 kb on + strand, within PP_0712at 827.764 kb on - strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strandat 827.873 kb on + strand, within PP_0712at 827.874 kb on - strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.116 kb on + strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.214 kb on + strand, within PP_0712at 828.215 kb on - strand, within PP_0712at 828.238 kb on + strand, within PP_0712at 828.239 kb on - strand, within PP_0712at 828.245 kb on + strand, within PP_0712at 828.246 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.426 kb on + strandat 828.426 kb on + strandat 828.445 kb on - strandat 828.445 kb on - strandat 828.486 kb on + strandat 828.486 kb on + strandat 828.495 kb on - strandat 828.652 kb on - strand, within PP_0713at 828.795 kb on + strand, within PP_0713at 828.796 kb on - strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.230 kb on + strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.325 kb on + strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713

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Per-strain Table

Position Strand Gene LocusTag Fraction microaerobic M9
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826,777 + +0.2
826,778 - -0.3
826,853 + -0.6
826,955 - PP_0711 0.23 -0.6
827,160 - PP_0711 0.56 +0.1
827,160 - PP_0711 0.56 +0.2
827,160 - PP_0711 0.56 -0.5
827,160 - PP_0711 0.56 +0.1
827,380 - +0.7
827,410 + -0.1
827,410 + -0.7
827,428 + +2.0
827,429 - -1.0
827,495 - +0.2
827,495 - +0.0
827,504 + -0.1
827,504 + -0.0
827,504 + +2.0
827,504 + -0.2
827,518 + -0.0
827,625 + PP_0712 0.11 -1.2
827,625 + PP_0712 0.11 -0.1
827,625 + PP_0712 0.11 -0.6
827,625 + PP_0712 0.11 +0.2
827,625 + PP_0712 0.11 -0.5
827,625 + PP_0712 0.11 -0.0
827,626 - PP_0712 0.11 -0.9
827,626 - PP_0712 0.11 +1.0
827,626 - PP_0712 0.11 +0.6
827,640 + PP_0712 0.13 -0.8
827,640 + PP_0712 0.13 -1.4
827,641 - PP_0712 0.13 +0.1
827,673 + PP_0712 0.17 -1.6
827,673 + PP_0712 0.17 -0.6
827,673 + PP_0712 0.17 +0.0
827,674 - PP_0712 0.17 +0.0
827,674 - PP_0712 0.17 -0.0
827,674 - PP_0712 0.17 -0.4
827,763 + PP_0712 0.28 -1.5
827,764 - PP_0712 0.28 -0.6
827,807 + PP_0712 0.33 -0.9
827,807 + PP_0712 0.33 +0.3
827,807 + PP_0712 0.33 +0.2
827,808 - PP_0712 0.33 -0.4
827,808 - PP_0712 0.33 +2.0
827,808 - PP_0712 0.33 -0.3
827,808 - +1.3
827,873 + PP_0712 0.41 -1.0
827,874 - PP_0712 0.41 +0.2
827,996 + PP_0712 0.56 +0.4
827,996 + PP_0712 0.56 -0.7
827,996 + PP_0712 0.56 -0.5
828,098 + PP_0712 0.69 +0.3
828,098 + PP_0712 0.69 -0.2
828,116 + PP_0712 0.71 +0.4
828,117 - PP_0712 0.71 -0.1
828,117 - PP_0712 0.71 +0.5
828,117 - PP_0712 0.71 -0.3
828,214 + PP_0712 0.83 -0.3
828,215 - PP_0712 0.83 -0.6
828,238 + PP_0712 0.86 +0.3
828,239 - PP_0712 0.86 -0.3
828,245 + PP_0712 0.87 -0.4
828,246 - PP_0712 0.87 -1.5
828,256 - PP_0712 0.88 -1.3
828,256 - PP_0712 0.88 +0.4
828,305 + -1.6
828,305 + -1.7
828,305 + +2.0
828,305 + +0.2
828,380 + +0.0
828,380 + +1.0
828,380 + -0.1
828,426 + -1.2
828,426 + -1.3
828,445 - -0.7
828,445 - -0.1
828,486 + -0.7
828,486 + -0.3
828,495 - +1.3
828,652 - PP_0713 0.22 +0.3
828,795 + PP_0713 0.34 -0.9
828,796 - PP_0713 0.34 -1.6
828,992 + PP_0713 0.50 +2.0
828,992 + PP_0713 0.50 -0.7
829,008 + PP_0713 0.52 +0.4
829,008 + PP_0713 0.52 -1.0
829,230 + PP_0713 0.70 -0.4
829,231 - PP_0713 0.70 -1.6
829,231 - PP_0713 0.70 +0.4
829,231 - PP_0713 0.70 -0.7
829,234 + PP_0713 0.71 -0.5
829,234 + PP_0713 0.71 -0.0
829,234 + PP_0713 0.71 -1.1
829,235 - PP_0713 0.71 +1.0
829,235 - PP_0713 0.71 +0.9
829,325 + PP_0713 0.78 +0.1
829,326 - PP_0713 0.78 -0.9
829,326 - PP_0713 0.78 +1.0
829,326 - PP_0713 0.78 +0.3

Or see this region's nucleotide sequence