Experiment: anaerobic M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0860 and PP_0861 are separated by 231 nucleotides PP_0861 and PP_0862 are separated by 221 nucleotides PP_0862 and PP_0863 are separated by 3 nucleotides
PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595
_0860
PP_0861: PP_0861 - outer membrane ferric siderophore receptor, at 997,827 to 1,000,118
_0861
PP_0862: PP_0862 - PKHD-type hydroxylase PP_0862, at 1,000,340 to 1,001,020
_0862
PP_0863: PP_0863 - conserved protein of unknown function, at 1,001,024 to 1,001,794
_0863
Position (kb) 997
998
999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 996.970 kb on + strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.194 kb on - strand, within PP_0860 at 997.291 kb on + strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.465 kb on - strand at 997.465 kb on - strand at 997.507 kb on + strand at 997.508 kb on - strand at 997.508 kb on - strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.732 kb on + strand at 997.733 kb on - strand at 997.906 kb on + strand at 997.909 kb on + strand at 997.910 kb on - strand at 997.910 kb on - strand at 997.969 kb on + strand at 997.969 kb on + strand at 997.988 kb on - strand at 997.992 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 998.032 kb on + strand at 998.032 kb on + strand at 998.033 kb on - strand at 998.090 kb on - strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.198 kb on - strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.288 kb on + strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.393 kb on - strand, within PP_0861 at 998.477 kb on + strand, within PP_0861 at 998.478 kb on - strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.633 kb on - strand, within PP_0861 at 998.641 kb on + strand, within PP_0861 at 998.641 kb on + strand, within PP_0861 at 998.662 kb on + strand, within PP_0861 at 998.663 kb on - strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.759 kb on - strand, within PP_0861 at 998.759 kb on - strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.823 kb on - strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.905 kb on + strand, within PP_0861 at 999.012 kb on - strand, within PP_0861 at 999.103 kb on + strand, within PP_0861 at 999.103 kb on + strand at 999.103 kb on + strand at 999.229 kb on + strand, within PP_0861 at 999.313 kb on + strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.355 kb on + strand, within PP_0861 at 999.358 kb on + strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.508 kb on + strand, within PP_0861 at 999.509 kb on - strand, within PP_0861 at 999.526 kb on + strand, within PP_0861 at 999.526 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.598 kb on - strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.728 kb on - strand, within PP_0861 at 999.731 kb on + strand, within PP_0861 at 999.731 kb on + strand, within PP_0861 at 999.732 kb on - strand, within PP_0861 at 999.732 kb on - strand, within PP_0861 at 999.807 kb on - strand, within PP_0861 at 999.903 kb on + strand at 999.904 kb on - strand at 999.950 kb on - strand at 1000.034 kb on - strand at 1000.036 kb on - strand at 1000.104 kb on + strand at 1000.104 kb on + strand at 1000.104 kb on + strand at 1000.105 kb on - strand at 1000.105 kb on - strand at 1000.105 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.141 kb on - strand at 1000.234 kb on + strand at 1000.260 kb on + strand at 1000.260 kb on + strand at 1000.261 kb on - strand at 1000.261 kb on - strand at 1000.325 kb on - strand at 1000.442 kb on + strand, within PP_0862 at 1000.718 kb on + strand, within PP_0862 at 1000.719 kb on - strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.796 kb on + strand, within PP_0862 at 1000.796 kb on + strand, within PP_0862 at 1000.848 kb on - strand, within PP_0862 at 1000.985 kb on + strand at 1000.985 kb on + strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.990 kb on + strand at 1000.990 kb on + strand at 1000.991 kb on - strand at 1000.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic M9 remove 996,970 + PP_0860 0.75 -0.8 996,971 - PP_0860 0.75 -0.4 996,971 - PP_0860 0.75 -0.4 996,971 - PP_0860 0.75 -0.6 997,007 - PP_0860 0.77 +0.5 997,007 - PP_0860 0.77 -0.7 997,007 - PP_0860 0.77 -0.8 997,194 - PP_0860 0.84 +0.4 997,291 + PP_0860 0.88 +0.3 997,292 - PP_0860 0.88 -0.6 997,292 - PP_0860 0.88 +0.1 997,464 + -0.0 997,464 + -0.4 997,464 + -2.6 997,464 + -0.3 997,464 + -0.1 997,465 - -0.2 997,465 - -0.7 997,507 + -1.4 997,508 - +1.6 997,508 - +0.8 997,642 + -0.2 997,642 + -0.3 997,642 + -0.1 997,643 - +0.1 997,643 - -0.5 997,643 - -1.3 997,643 - +0.1 997,732 + +0.5 997,733 - -0.2 997,906 + +1.9 997,909 + +0.2 997,910 - -0.1 997,910 - -1.2 997,969 + -0.0 997,969 + -1.7 997,988 - -0.3 997,992 + -0.0 997,996 + +0.0 997,996 + -1.4 997,996 + +0.4 997,996 + -0.7 997,996 + +0.1 997,997 - -1.1 997,997 - -0.0 997,997 - -0.1 997,997 - +2.2 998,032 + -0.3 998,032 + -0.3 998,033 - -0.1 998,090 - PP_0861 0.11 -1.5 998,191 + PP_0861 0.16 -0.9 998,191 + PP_0861 0.16 -0.2 998,191 + PP_0861 0.16 -1.9 998,191 + PP_0861 0.16 -1.1 998,192 - PP_0861 0.16 -1.0 998,192 - PP_0861 0.16 -1.1 998,192 - PP_0861 0.16 -1.0 998,192 - PP_0861 0.16 +1.4 998,192 - PP_0861 0.16 -1.1 998,192 - PP_0861 0.16 +1.6 998,192 - PP_0861 0.16 -0.3 998,197 + PP_0861 0.16 +0.1 998,197 + PP_0861 0.16 -0.6 998,197 + PP_0861 0.16 +0.2 998,198 - PP_0861 0.16 +0.6 998,284 + PP_0861 0.20 -0.5 998,284 + PP_0861 0.20 -1.0 998,284 + PP_0861 0.20 +0.2 998,284 + PP_0861 0.20 +3.2 998,288 + PP_0861 0.20 -1.4 998,289 - PP_0861 0.20 +0.1 998,289 - PP_0861 0.20 -1.5 998,289 - PP_0861 0.20 +0.6 998,393 - PP_0861 0.25 -0.4 998,477 + PP_0861 0.28 -0.5 998,478 - PP_0861 0.28 -0.5 998,521 + PP_0861 0.30 -0.2 998,521 + PP_0861 0.30 +0.1 998,521 + PP_0861 0.30 -0.7 998,522 - PP_0861 0.30 -0.6 998,522 - PP_0861 0.30 -0.5 998,530 + PP_0861 0.31 +0.0 998,530 + +1.6 998,530 + PP_0861 0.31 -0.0 998,530 + PP_0861 0.31 -0.2 998,530 + PP_0861 0.31 +0.5 998,530 + PP_0861 0.31 -0.5 998,530 + PP_0861 0.31 -0.0 998,531 - PP_0861 0.31 -0.0 998,531 - PP_0861 0.31 -1.0 998,531 - PP_0861 0.31 -0.8 998,531 - PP_0861 0.31 -0.9 998,531 - PP_0861 0.31 -1.3 998,633 - PP_0861 0.35 -0.6 998,641 + PP_0861 0.36 +0.3 998,641 + PP_0861 0.36 -0.9 998,662 + PP_0861 0.36 -0.7 998,663 - PP_0861 0.36 -0.6 998,719 + PP_0861 0.39 +0.3 998,719 + PP_0861 0.39 -1.8 998,719 + PP_0861 0.39 +1.2 998,720 - PP_0861 0.39 +0.8 998,720 - PP_0861 0.39 -0.2 998,720 - PP_0861 0.39 +1.1 998,758 + PP_0861 0.41 -0.4 998,758 + PP_0861 0.41 -0.7 998,758 + PP_0861 0.41 -0.6 998,759 - PP_0861 0.41 -0.2 998,759 - PP_0861 0.41 -0.3 998,822 + PP_0861 0.43 +2.1 998,822 + PP_0861 0.43 -0.3 998,822 + PP_0861 0.43 +0.8 998,823 - PP_0861 0.43 +0.7 998,824 + PP_0861 0.43 -2.1 998,824 + PP_0861 0.43 +1.2 998,824 + PP_0861 0.43 -0.0 998,824 + PP_0861 0.43 -1.5 998,905 + PP_0861 0.47 -1.5 999,012 - PP_0861 0.52 -1.0 999,103 + PP_0861 0.56 -1.1 999,103 + +0.6 999,103 + +1.6 999,229 + PP_0861 0.61 +0.4 999,313 + PP_0861 0.65 +0.3 999,314 - PP_0861 0.65 +1.0 999,314 - PP_0861 0.65 -0.1 999,314 - PP_0861 0.65 +0.3 999,355 + PP_0861 0.67 -0.6 999,358 + PP_0861 0.67 -0.5 999,359 - PP_0861 0.67 -0.6 999,359 - PP_0861 0.67 +0.2 999,359 - PP_0861 0.67 -0.5 999,427 + PP_0861 0.70 -0.5 999,427 + PP_0861 0.70 -1.1 999,427 + PP_0861 0.70 -0.4 999,427 + PP_0861 0.70 -0.1 999,427 + PP_0861 0.70 -0.6 999,428 - PP_0861 0.70 +0.1 999,428 - PP_0861 0.70 -0.6 999,428 - PP_0861 0.70 -0.1 999,428 - PP_0861 0.70 -0.0 999,508 + PP_0861 0.73 +1.6 999,509 - PP_0861 0.73 -0.4 999,526 + PP_0861 0.74 -0.6 999,526 + PP_0861 0.74 -1.6 999,597 + PP_0861 0.77 -1.2 999,597 + PP_0861 0.77 +0.5 999,597 + PP_0861 0.77 +0.0 999,598 - PP_0861 0.77 +0.1 999,727 + PP_0861 0.83 +0.2 999,727 + PP_0861 0.83 +0.4 999,727 + PP_0861 0.83 -0.3 999,727 + PP_0861 0.83 +1.3 999,728 - PP_0861 0.83 -0.4 999,731 + PP_0861 0.83 +0.0 999,731 + PP_0861 0.83 -1.6 999,732 - PP_0861 0.83 +0.9 999,732 - PP_0861 0.83 -0.4 999,807 - PP_0861 0.86 -0.2 999,903 + -0.6 999,904 - +0.4 999,950 - -0.6 1,000,034 - -0.3 1,000,036 - -0.5 1,000,104 + -0.0 1,000,104 + +0.9 1,000,104 + +0.1 1,000,105 - +0.4 1,000,105 - +0.0 1,000,105 - -0.1 1,000,109 - +0.1 1,000,109 - -1.1 1,000,109 - +0.3 1,000,109 - -1.4 1,000,140 + -0.5 1,000,140 + -0.3 1,000,141 - -1.0 1,000,234 + -2.1 1,000,260 + -2.3 1,000,260 + -0.7 1,000,261 - +0.5 1,000,261 - +1.6 1,000,325 - -1.3 1,000,442 + PP_0862 0.15 +0.8 1,000,718 + PP_0862 0.56 -0.9 1,000,719 - PP_0862 0.56 +0.5 1,000,751 + PP_0862 0.60 -0.4 1,000,751 + PP_0862 0.60 +0.0 1,000,751 + PP_0862 0.60 +0.8 1,000,752 - PP_0862 0.60 +0.5 1,000,752 - PP_0862 0.60 -0.0 1,000,752 - PP_0862 0.60 -0.8 1,000,752 - PP_0862 0.60 +0.7 1,000,752 - PP_0862 0.60 -2.2 1,000,796 + PP_0862 0.67 -0.9 1,000,796 + PP_0862 0.67 -0.4 1,000,848 - PP_0862 0.75 -0.8 1,000,985 + +0.5 1,000,985 + -0.6 1,000,986 - +0.3 1,000,986 - -0.3 1,000,986 - +0.1 1,000,986 - -1.0 1,000,990 + -1.3 1,000,990 + -0.6 1,000,991 - -0.0 1,000,991 - -0.4
Or see this region's nucleotide sequence