Strain Fitness in Pseudomonas putida KT2440 around PP_0308

Experiment: anaerobic M9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0306 and PP_0307 are separated by 102 nucleotidesPP_0307 and PP_0308 are separated by 270 nucleotidesPP_0308 and PP_0309 are separated by 75 nucleotidesPP_0309 and PP_0310 are separated by 15 nucleotides PP_0306: PP_0306 - conserved protein of unknown function, at 367,388 to 368,116 _0306 PP_0307: PP_0307 - conserved exported protein of unknown function, at 368,219 to 368,650 _0307 PP_0308: PP_0308 - putative dipeptidase, at 368,921 to 369,898 _0308 PP_0309: PP_0309 - conserved protein of unknown function, at 369,974 to 370,504 _0309 PP_0310: PP_0310 - putative dimethylglycine dehydrogenase subunit, at 370,520 to 372,580 _0310 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1at 368.025 kb on - strand, within PP_0306at 368.096 kb on + strandat 368.096 kb on + strandat 368.097 kb on - strandat 368.146 kb on - strandat 368.157 kb on - strandat 368.325 kb on + strand, within PP_0307at 368.326 kb on - strand, within PP_0307at 368.412 kb on - strand, within PP_0307at 368.412 kb on - strand, within PP_0307at 368.698 kb on + strandat 368.698 kb on + strandat 368.698 kb on + strandat 368.699 kb on - strandat 368.699 kb on - strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.856 kb on - strandat 368.856 kb on - strandat 368.902 kb on + strandat 368.902 kb on + strandat 368.903 kb on - strandat 368.904 kb on + strandat 368.905 kb on - strandat 368.937 kb on + strandat 368.938 kb on - strandat 368.938 kb on - strandat 369.230 kb on + strand, within PP_0308at 369.230 kb on + strand, within PP_0308at 369.230 kb on + strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.279 kb on - strand, within PP_0308at 369.311 kb on + strand, within PP_0308at 369.312 kb on - strand, within PP_0308at 369.312 kb on - strand, within PP_0308at 369.453 kb on - strand, within PP_0308at 369.602 kb on + strand, within PP_0308at 369.603 kb on - strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.621 kb on - strand, within PP_0308at 369.621 kb on - strand, within PP_0308at 369.702 kb on - strand, within PP_0308at 369.702 kb on - strand, within PP_0308at 369.722 kb on + strand, within PP_0308at 369.896 kb on + strandat 369.897 kb on - strandat 369.917 kb on + strandat 369.917 kb on + strandat 369.918 kb on - strandat 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.087 kb on + strand, within PP_0309at 370.087 kb on + strand, within PP_0309at 370.088 kb on - strand, within PP_0309at 370.121 kb on + strand, within PP_0309at 370.122 kb on - strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.148 kb on + strand, within PP_0309at 370.291 kb on + strand, within PP_0309at 370.292 kb on - strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.335 kb on - strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.448 kb on + strand, within PP_0309at 370.449 kb on - strand, within PP_0309at 370.489 kb on + strandat 370.513 kb on + strandat 370.607 kb on + strandat 370.607 kb on + strandat 370.607 kb on + strandat 370.608 kb on - strandat 370.640 kb on + strandat 370.641 kb on - strandat 370.649 kb on + strandat 370.650 kb on - strandat 370.652 kb on + strandat 370.835 kb on - strand, within PP_0310

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic M9
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368,025 - PP_0306 0.87 -1.5
368,096 + -0.4
368,096 + +0.1
368,097 - -0.5
368,146 - -0.3
368,157 - +0.6
368,325 + PP_0307 0.25 -0.2
368,326 - PP_0307 0.25 -0.9
368,412 - PP_0307 0.45 -0.4
368,412 - PP_0307 0.45 -0.2
368,698 + -0.3
368,698 + -1.2
368,698 + -0.3
368,699 - -1.6
368,699 - +0.5
368,855 + -1.1
368,855 + +1.0
368,855 + +0.4
368,855 + -0.7
368,855 + +0.0
368,855 + +0.8
368,855 + -0.7
368,856 - -0.3
368,856 - +0.1
368,902 + -0.1
368,902 + -1.2
368,903 - -0.4
368,904 + +0.4
368,905 - -0.0
368,937 + +0.1
368,938 - -0.3
368,938 - +0.5
369,230 + PP_0308 0.32 -1.2
369,230 + PP_0308 0.32 +0.5
369,230 + PP_0308 0.32 +0.4
369,231 - PP_0308 0.32 +0.7
369,231 - PP_0308 0.32 -0.2
369,231 - PP_0308 0.32 +0.1
369,231 - PP_0308 0.32 -0.1
369,231 - PP_0308 0.32 +0.0
369,231 - PP_0308 0.32 -0.5
369,278 + PP_0308 0.37 +1.0
369,278 + PP_0308 0.37 -0.3
369,278 + PP_0308 0.37 -0.4
369,279 - PP_0308 0.37 -0.2
369,311 + PP_0308 0.40 +0.5
369,312 - PP_0308 0.40 -0.9
369,312 - PP_0308 0.40 -1.1
369,453 - PP_0308 0.54 +0.4
369,602 + PP_0308 0.70 +0.2
369,603 - PP_0308 0.70 -0.0
369,620 + PP_0308 0.71 +1.7
369,620 + PP_0308 0.71 -0.3
369,620 + PP_0308 0.71 -0.2
369,621 - PP_0308 0.72 +0.4
369,621 - PP_0308 0.72 -0.7
369,702 - PP_0308 0.80 -0.3
369,702 - PP_0308 0.80 +0.2
369,722 + PP_0308 0.82 +0.0
369,896 + -2.3
369,897 - +0.3
369,917 + +1.1
369,917 + +0.9
369,918 - +0.1
370,055 + PP_0309 0.15 +0.9
370,055 + PP_0309 0.15 +0.2
370,055 + PP_0309 0.15 +1.7
370,055 + PP_0309 0.15 +1.6
370,056 - PP_0309 0.15 -0.4
370,056 - PP_0309 0.15 +0.2
370,056 - PP_0309 0.15 +0.1
370,056 - PP_0309 0.15 -0.9
370,056 - PP_0309 0.15 +0.6
370,087 + PP_0309 0.21 +0.2
370,087 + PP_0309 0.21 +0.0
370,088 - PP_0309 0.21 +0.3
370,121 + PP_0309 0.28 -0.7
370,122 - PP_0309 0.28 -0.0
370,136 + PP_0309 0.31 -0.1
370,136 + PP_0309 0.31 -0.1
370,136 + PP_0309 0.31 -0.0
370,136 + PP_0309 0.31 -0.2
370,148 + PP_0309 0.33 -1.4
370,291 + PP_0309 0.60 -0.4
370,292 - PP_0309 0.60 +0.1
370,328 + PP_0309 0.67 -1.0
370,328 + PP_0309 0.67 -0.3
370,328 + PP_0309 0.67 -0.0
370,329 - PP_0309 0.67 +0.3
370,329 - PP_0309 0.67 +0.7
370,329 - PP_0309 0.67 -0.5
370,329 - PP_0309 0.67 -0.8
370,334 + PP_0309 0.68 +0.6
370,334 + PP_0309 0.68 -1.4
370,334 + PP_0309 0.68 -0.3
370,335 - PP_0309 0.68 +1.1
370,361 + PP_0309 0.73 +0.3
370,361 + PP_0309 0.73 +0.6
370,361 + PP_0309 0.73 -0.1
370,362 - PP_0309 0.73 -0.1
370,362 - PP_0309 0.73 -0.1
370,362 - PP_0309 0.73 -2.2
370,362 - PP_0309 0.73 +0.6
370,448 + PP_0309 0.89 +0.1
370,449 - PP_0309 0.89 +0.7
370,489 + +0.8
370,513 + -0.0
370,607 + +1.7
370,607 + -0.4
370,607 + +0.5
370,608 - -2.7
370,640 + +0.7
370,641 - +0.2
370,649 + +0.1
370,650 - +0.2
370,652 + -0.4
370,835 - PP_0310 0.15 +0.5

Or see this region's nucleotide sequence