Experiment: Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:1 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiB and folE are separated by 16 nucleotides folE and yeiG are separated by 257 nucleotides yeiG and cirA are separated by 31 nucleotides
b2152: yeiB - conserved inner membrane protein (NCBI), at 2,239,832 to 2,240,989
yeiB
b2153: folE - GTP cyclohydrolase I (NCBI), at 2,241,006 to 2,241,674
folE
b2154: yeiG - predicted esterase (NCBI), at 2,241,932 to 2,242,768
yeiG
b2155: cirA - ferric iron-catecholate outer membrane transporter (NCBI), at 2,242,800 to 2,244,791
cirA
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-1
0
1 at 2241.735 kb on + strand at 2241.778 kb on - strand at 2241.778 kb on - strand at 2241.884 kb on - strand at 2241.884 kb on - strand at 2242.006 kb on - strand at 2242.045 kb on + strand, within yeiG at 2242.062 kb on - strand, within yeiG at 2242.062 kb on - strand, within yeiG at 2242.149 kb on + strand, within yeiG at 2242.453 kb on + strand, within yeiG at 2242.453 kb on + strand, within yeiG at 2242.456 kb on - strand, within yeiG at 2242.504 kb on + strand, within yeiG at 2242.626 kb on - strand, within yeiG at 2242.719 kb on + strand at 2242.719 kb on + strand at 2242.753 kb on + strand at 2242.761 kb on - strand at 2242.761 kb on - strand at 2242.890 kb on + strand at 2242.898 kb on - strand at 2242.921 kb on + strand at 2242.921 kb on + strand at 2242.942 kb on + strand at 2242.967 kb on + strand at 2243.005 kb on + strand, within cirA at 2243.005 kb on + strand, within cirA at 2243.143 kb on - strand, within cirA at 2243.202 kb on - strand, within cirA at 2243.202 kb on - strand, within cirA at 2243.243 kb on - strand, within cirA at 2243.295 kb on + strand, within cirA at 2243.417 kb on - strand, within cirA at 2243.417 kb on - strand, within cirA at 2243.561 kb on - strand, within cirA at 2243.603 kb on - strand, within cirA at 2243.616 kb on - strand, within cirA at 2243.616 kb on - strand, within cirA
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:1 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan remove 2,241,735 + +0.1 2,241,778 - +0.5 2,241,778 - +0.0 2,241,884 - +0.2 2,241,884 - +0.3 2,242,006 - +0.0 2,242,045 + yeiG b2154 0.14 -0.1 2,242,062 - yeiG b2154 0.16 +0.1 2,242,062 - yeiG b2154 0.16 +0.4 2,242,149 + yeiG b2154 0.26 +0.3 2,242,453 + yeiG b2154 0.62 +0.6 2,242,453 + yeiG b2154 0.62 +0.6 2,242,456 - yeiG b2154 0.63 -0.0 2,242,504 + yeiG b2154 0.68 -0.7 2,242,626 - yeiG b2154 0.83 +0.1 2,242,719 + +0.8 2,242,719 + +0.3 2,242,753 + +0.1 2,242,761 - +0.7 2,242,761 - +0.4 2,242,890 + -0.5 2,242,898 - +0.8 2,242,921 + +0.1 2,242,921 + +0.8 2,242,942 + -1.3 2,242,967 + -0.4 2,243,005 + cirA b2155 0.10 +0.9 2,243,005 + cirA b2155 0.10 +0.1 2,243,143 - cirA b2155 0.17 +0.2 2,243,202 - cirA b2155 0.20 -0.7 2,243,202 - cirA b2155 0.20 -0.1 2,243,243 - cirA b2155 0.22 +0.2 2,243,295 + cirA b2155 0.25 +0.2 2,243,417 - cirA b2155 0.31 -0.2 2,243,417 - cirA b2155 0.31 -0.8 2,243,561 - cirA b2155 0.38 -0.4 2,243,603 - cirA b2155 0.40 +0.1 2,243,616 - cirA b2155 0.41 +0.3 2,243,616 - cirA b2155 0.41 +0.5
Or see this region's nucleotide sequence