Experiment: Mixed culture; Bdellovibrio bacteriovorus HD100 1:1 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt essD and ybcS overlap by 1 nucleotides ybcS and rzpD overlap by 4 nucleotides rzpD and rzoD overlap by 242 nucleotides rzoD and borD are separated by 90 nucleotides borD and ybcV are separated by 290 nucleotides ybcV and ybcW are separated by 285 nucleotides
b0554: essD - DLP12 prophage; predicted phage lysis protein (NCBI), at 576,621 to 576,836
essD
b0555: ybcS - DLP12 prophage; predicted lysozyme (NCBI), at 576,836 to 577,333
ybcS
b0556: rzpD - DLP12 prophage; predicted murein endopeptidase (NCBI), at 577,330 to 577,791
rzpD
b4510: rzoD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,550 to 577,732
rzoD
b0557: borD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,823 to 578,116
borD
b0558: ybcV - putative an envelop protein (VIMSS), at 578,407 to 578,817
ybcV
b0559: ybcW - DLP12 prophage; predicted protein (NCBI), at 579,103 to 579,309
ybcW
Position (kb) 577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 576.826 kb on - strand at 576.839 kb on + strand at 576.855 kb on + strand at 576.869 kb on + strand at 576.869 kb on + strand at 576.891 kb on + strand, within ybcS at 576.891 kb on + strand, within ybcS at 576.902 kb on + strand, within ybcS at 576.920 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.942 kb on + strand, within ybcS at 576.956 kb on + strand, within ybcS at 576.956 kb on - strand, within ybcS at 576.975 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.989 kb on - strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 577.024 kb on - strand, within ybcS at 577.057 kb on + strand, within ybcS at 577.072 kb on + strand, within ybcS at 577.077 kb on - strand, within ybcS at 577.117 kb on + strand, within ybcS at 577.145 kb on - strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.156 kb on - strand, within ybcS at 577.205 kb on + strand, within ybcS at 577.227 kb on + strand, within ybcS at 577.232 kb on + strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.285 kb on - strand at 577.337 kb on + strand at 577.337 kb on + strand at 577.384 kb on - strand, within rzpD at 577.384 kb on - strand, within rzpD at 577.386 kb on + strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.405 kb on - strand, within rzpD at 577.408 kb on - strand, within rzpD at 577.662 kb on + strand at 577.721 kb on + strand at 577.728 kb on + strand at 577.767 kb on + strand at 577.767 kb on + strand at 577.786 kb on + strand at 577.786 kb on + strand at 577.787 kb on + strand at 577.791 kb on + strand at 577.794 kb on - strand at 577.797 kb on + strand at 577.798 kb on + strand at 577.799 kb on - strand at 577.804 kb on - strand at 577.814 kb on + strand at 577.830 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.872 kb on + strand, within borD at 577.911 kb on + strand, within borD at 578.011 kb on - strand, within borD at 578.018 kb on - strand, within borD at 578.018 kb on - strand, within borD at 578.021 kb on + strand, within borD at 578.025 kb on + strand, within borD at 578.028 kb on - strand, within borD at 578.031 kb on - strand, within borD at 578.049 kb on + strand, within borD at 578.049 kb on + strand, within borD at 578.050 kb on - strand, within borD at 578.050 kb on - strand, within borD at 578.062 kb on - strand, within borD at 578.062 kb on - strand, within borD at 578.067 kb on + strand, within borD at 578.070 kb on - strand, within borD at 578.070 kb on - strand, within borD at 578.071 kb on + strand, within borD at 578.071 kb on + strand, within borD at 578.081 kb on - strand, within borD at 578.081 kb on - strand, within borD at 578.089 kb on + strand at 578.097 kb on - strand at 578.097 kb on - strand at 578.097 kb on - strand at 578.159 kb on - strand at 578.176 kb on + strand at 578.241 kb on - strand at 578.270 kb on + strand at 578.276 kb on - strand at 578.280 kb on + strand at 578.283 kb on - strand at 578.283 kb on - strand at 578.283 kb on - strand at 578.289 kb on - strand at 578.297 kb on - strand at 578.299 kb on - strand at 578.302 kb on + strand at 578.302 kb on + strand at 578.314 kb on + strand at 578.334 kb on + strand at 578.336 kb on + strand at 578.337 kb on - strand at 578.337 kb on - strand at 578.351 kb on - strand at 578.356 kb on - strand at 578.356 kb on - strand at 578.364 kb on - strand at 578.366 kb on - strand at 578.377 kb on + strand at 578.378 kb on - strand at 578.378 kb on - strand at 578.383 kb on - strand at 578.383 kb on - strand at 578.383 kb on - strand at 578.394 kb on - strand at 578.395 kb on - strand at 578.395 kb on - strand at 578.408 kb on - strand at 578.410 kb on - strand at 578.410 kb on - strand at 578.429 kb on - strand at 578.581 kb on + strand, within ybcV at 578.916 kb on + strand at 578.972 kb on - strand at 578.985 kb on + strand at 579.007 kb on + strand at 579.008 kb on + strand at 579.008 kb on + strand at 579.008 kb on + strand at 579.008 kb on + strand at 579.012 kb on + strand at 579.012 kb on + strand at 579.013 kb on + strand at 579.015 kb on - strand at 579.015 kb on - strand at 579.015 kb on - strand at 579.015 kb on - strand at 579.017 kb on + strand at 579.017 kb on + strand at 579.017 kb on + strand at 579.025 kb on + strand at 579.025 kb on + strand at 579.027 kb on - strand at 579.027 kb on - strand at 579.027 kb on - strand at 579.035 kb on - strand at 579.044 kb on + strand at 579.081 kb on - strand at 579.083 kb on - strand at 579.085 kb on + strand at 579.086 kb on + strand at 579.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Bdellovibrio bacteriovorus HD100 1:1 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan remove 576,826 - -0.2 576,839 + -0.5 576,855 + +0.1 576,869 + +0.0 576,869 + -0.2 576,891 + ybcS b0555 0.11 +1.0 576,891 + ybcS b0555 0.11 -0.1 576,902 + ybcS b0555 0.13 -0.6 576,920 + ybcS b0555 0.17 -0.7 576,932 + ybcS b0555 0.19 -0.3 576,932 + ybcS b0555 0.19 -1.2 576,940 - ybcS b0555 0.21 -0.9 576,940 - ybcS b0555 0.21 -0.5 576,941 - ybcS b0555 0.21 -0.9 576,941 - ybcS b0555 0.21 +1.1 576,942 + ybcS b0555 0.21 -0.4 576,956 + ybcS b0555 0.24 +0.0 576,956 - ybcS b0555 0.24 +0.3 576,975 + ybcS b0555 0.28 -0.3 576,986 + ybcS b0555 0.30 -0.2 576,986 + ybcS b0555 0.30 -0.4 576,989 - ybcS b0555 0.31 -0.2 576,990 + ybcS b0555 0.31 -0.0 576,990 + ybcS b0555 0.31 -0.8 576,990 + ybcS b0555 0.31 +0.0 576,990 + ybcS b0555 0.31 -0.6 576,990 + ybcS b0555 0.31 +0.0 576,994 - ybcS b0555 0.32 +1.3 576,994 - ybcS b0555 0.32 +0.2 576,994 - ybcS b0555 0.32 +0.1 577,024 - ybcS b0555 0.38 +0.6 577,057 + ybcS b0555 0.44 +0.3 577,072 + ybcS b0555 0.47 -0.1 577,077 - ybcS b0555 0.48 -1.1 577,117 + ybcS b0555 0.56 -0.7 577,145 - ybcS b0555 0.62 -0.6 577,146 + ybcS b0555 0.62 +0.3 577,146 + ybcS b0555 0.62 -0.6 577,156 - ybcS b0555 0.64 +0.9 577,205 + ybcS b0555 0.74 +0.1 577,227 + ybcS b0555 0.79 +0.3 577,232 + ybcS b0555 0.80 -0.3 577,243 - ybcS b0555 0.82 +0.4 577,243 - ybcS b0555 0.82 -2.3 577,285 - +0.1 577,337 + +0.4 577,337 + +0.2 577,384 - rzpD b0556 0.12 -0.2 577,384 - rzpD b0556 0.12 -0.1 577,386 + rzpD b0556 0.12 +0.1 577,394 - rzpD b0556 0.14 -0.0 577,394 - rzpD b0556 0.14 -1.4 577,405 - rzpD b0556 0.16 +0.0 577,408 - rzpD b0556 0.17 +0.4 577,662 + -0.3 577,721 + -0.1 577,728 + +0.3 577,767 + -0.2 577,767 + -0.3 577,786 + -0.2 577,786 + -0.8 577,787 + -0.0 577,791 + -0.1 577,794 - -0.5 577,797 + -0.0 577,798 + +1.3 577,799 - +0.1 577,804 - -0.2 577,814 + +0.2 577,830 + -0.3 577,835 + -0.0 577,835 + -0.4 577,835 + -1.4 577,835 + -0.5 577,872 + borD b0557 0.17 -2.3 577,911 + borD b0557 0.30 -0.1 578,011 - borD b0557 0.64 -0.3 578,018 - borD b0557 0.66 -1.0 578,018 - borD b0557 0.66 -0.9 578,021 + borD b0557 0.67 -1.1 578,025 + borD b0557 0.69 -1.1 578,028 - borD b0557 0.70 -0.4 578,031 - borD b0557 0.71 +0.0 578,049 + borD b0557 0.77 +0.1 578,049 + borD b0557 0.77 +0.3 578,050 - borD b0557 0.77 -3.8 578,050 - borD b0557 0.77 -0.6 578,062 - borD b0557 0.81 -0.4 578,062 - borD b0557 0.81 -0.6 578,067 + borD b0557 0.83 -0.4 578,070 - borD b0557 0.84 +0.0 578,070 - borD b0557 0.84 -0.7 578,071 + borD b0557 0.84 -0.3 578,071 + borD b0557 0.84 +0.1 578,081 - borD b0557 0.88 -0.3 578,081 - borD b0557 0.88 -1.0 578,089 + +1.0 578,097 - -0.3 578,097 - -1.2 578,097 - -0.0 578,159 - +0.0 578,176 + +0.0 578,241 - +0.4 578,270 + -1.6 578,276 - +0.1 578,280 + +1.7 578,283 - +0.7 578,283 - -0.3 578,283 - +1.7 578,289 - +1.7 578,297 - +1.7 578,299 - +0.7 578,302 + -0.2 578,302 + -1.0 578,314 + -0.9 578,334 + -1.5 578,336 + -1.5 578,337 - -1.1 578,337 - +0.1 578,351 - +1.1 578,356 - +0.7 578,356 - +0.7 578,364 - -0.3 578,366 - -0.0 578,377 + +0.1 578,378 - -0.5 578,378 - -2.8 578,383 - +0.0 578,383 - -0.2 578,383 - +1.7 578,394 - +0.1 578,395 - +0.1 578,395 - -0.3 578,408 - -1.3 578,410 - +1.7 578,410 - +1.7 578,429 - +1.7 578,581 + ybcV b0558 0.42 +1.7 578,916 + +1.7 578,972 - +0.1 578,985 + -0.6 579,007 + +0.7 579,008 + -0.6 579,008 + +1.7 579,008 + +1.7 579,008 + -0.9 579,012 + -2.0 579,012 + +2.3 579,013 + +2.7 579,015 - +1.3 579,015 - +1.7 579,015 - +1.3 579,015 - +0.3 579,017 + -1.8 579,017 + -0.3 579,017 + +1.7 579,025 + -0.9 579,025 + -1.8 579,027 - -1.0 579,027 - +0.1 579,027 - -1.3 579,035 - +0.5 579,044 + +1.0 579,081 - -0.5 579,083 - -1.8 579,085 + +0.7 579,086 + +0.2 579,093 - -1.1
Or see this region's nucleotide sequence