Strain Fitness in Pseudomonas putida KT2440 around PP_0405

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0404 and PP_0405 are separated by 130 nucleotidesPP_0405 and PP_0406 overlap by 4 nucleotidesPP_0406 and PP_0407 are separated by 1 nucleotides PP_0404: PP_0404 - LPS-assembly protein LptD, at 489,598 to 492,420 _0404 PP_0405: PP_0405 - conserved protein of unknown function, at 492,551 to 493,570 _0405 PP_0406: PP_0406 - Nucleotidyltransferase family protein, at 493,567 to 494,238 _0406 PP_0407: PP_0407 - DnaJ-like protein DjlA, at 494,240 to 495,007 _0407 Position (kb) 492 493 494Strain fitness (log2 ratio) -1 0 1 2at 492.506 kb on - strandat 492.567 kb on + strandat 492.567 kb on + strandat 492.567 kb on + strandat 492.567 kb on + strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.693 kb on - strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.804 kb on + strand, within PP_0405at 492.805 kb on - strand, within PP_0405at 492.805 kb on - strand, within PP_0405at 492.805 kb on - strand, within PP_0405at 492.805 kb on - strand, within PP_0405at 492.805 kb on - strand, within PP_0405at 492.878 kb on + strand, within PP_0405at 492.878 kb on + strand, within PP_0405at 492.878 kb on + strand, within PP_0405at 492.878 kb on + strand, within PP_0405at 492.878 kb on + strand, within PP_0405at 492.879 kb on - strand, within PP_0405at 492.879 kb on - strand, within PP_0405at 492.983 kb on + strand, within PP_0405at 492.984 kb on - strand, within PP_0405at 492.984 kb on - strand, within PP_0405at 493.031 kb on + strand, within PP_0405at 493.032 kb on - strand, within PP_0405at 493.032 kb on - strand, within PP_0405at 493.141 kb on - strand, within PP_0405at 493.141 kb on - strandat 493.141 kb on - strand, within PP_0405at 493.141 kb on - strand, within PP_0405at 493.141 kb on - strand, within PP_0405at 493.141 kb on - strand, within PP_0405at 493.151 kb on + strand, within PP_0405at 493.151 kb on + strand, within PP_0405at 493.152 kb on - strand, within PP_0405at 493.152 kb on - strand, within PP_0405at 493.216 kb on - strand, within PP_0405at 493.217 kb on + strand, within PP_0405at 493.217 kb on + strand, within PP_0405at 493.232 kb on + strand, within PP_0405at 493.232 kb on + strand, within PP_0405at 493.233 kb on - strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.240 kb on + strand, within PP_0405at 493.241 kb on - strand, within PP_0405at 493.241 kb on - strand, within PP_0405at 493.454 kb on + strand, within PP_0405at 493.455 kb on - strand, within PP_0405at 493.484 kb on + strandat 493.485 kb on - strandat 493.485 kb on - strandat 493.486 kb on + strandat 493.487 kb on - strandat 493.487 kb on - strandat 493.488 kb on + strandat 493.488 kb on + strandat 493.488 kb on + strandat 493.489 kb on - strandat 493.489 kb on - strandat 493.489 kb on - strandat 493.489 kb on - strandat 493.489 kb on - strandat 493.489 kb on - strandat 493.673 kb on - strand, within PP_0406at 493.901 kb on - strand, within PP_0406at 494.147 kb on + strand, within PP_0406at 494.148 kb on - strand, within PP_0406at 494.161 kb on + strand, within PP_0406at 494.161 kb on + strand, within PP_0406at 494.162 kb on - strand, within PP_0406at 494.162 kb on - strand, within PP_0406at 494.162 kb on - strand, within PP_0406at 494.473 kb on + strand, within PP_0407at 494.473 kb on + strand, within PP_0407

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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492,506 - -0.1
492,567 + +0.6
492,567 + +2.1
492,567 + +1.5
492,567 + +1.8
492,568 - +0.8
492,568 - +0.4
492,568 - -0.4
492,568 - +1.5
492,693 - PP_0405 0.14 +0.7
492,804 + PP_0405 0.25 +0.5
492,804 + PP_0405 0.25 +0.4
492,804 + PP_0405 0.25 -0.6
492,804 + PP_0405 0.25 -0.1
492,804 + PP_0405 0.25 +1.4
492,804 + PP_0405 0.25 -0.8
492,804 + PP_0405 0.25 +0.1
492,804 + PP_0405 0.25 +0.2
492,804 + PP_0405 0.25 +0.2
492,804 + PP_0405 0.25 +0.4
492,804 + PP_0405 0.25 +1.1
492,805 - PP_0405 0.25 -0.4
492,805 - PP_0405 0.25 +0.5
492,805 - PP_0405 0.25 +0.7
492,805 - PP_0405 0.25 +0.5
492,805 - PP_0405 0.25 +0.0
492,878 + PP_0405 0.32 +1.4
492,878 + PP_0405 0.32 +1.8
492,878 + PP_0405 0.32 +0.3
492,878 + PP_0405 0.32 +0.3
492,878 + PP_0405 0.32 -0.3
492,879 - PP_0405 0.32 +0.4
492,879 - PP_0405 0.32 +0.3
492,983 + PP_0405 0.42 -0.1
492,984 - PP_0405 0.42 -0.5
492,984 - PP_0405 0.42 +0.2
493,031 + PP_0405 0.47 +0.4
493,032 - PP_0405 0.47 -1.4
493,032 - PP_0405 0.47 -0.3
493,141 - PP_0405 0.58 -1.2
493,141 - +0.5
493,141 - PP_0405 0.58 +1.5
493,141 - PP_0405 0.58 -0.2
493,141 - PP_0405 0.58 -0.8
493,141 - PP_0405 0.58 +0.9
493,151 + PP_0405 0.59 +0.7
493,151 + PP_0405 0.59 +2.1
493,152 - PP_0405 0.59 -0.5
493,152 - PP_0405 0.59 -0.6
493,216 - PP_0405 0.65 -0.1
493,217 + PP_0405 0.65 +1.3
493,217 + PP_0405 0.65 +0.3
493,232 + PP_0405 0.67 +0.9
493,232 + PP_0405 0.67 +0.3
493,233 - PP_0405 0.67 -0.5
493,240 + PP_0405 0.68 -0.4
493,240 + PP_0405 0.68 +0.9
493,240 + PP_0405 0.68 +0.3
493,240 + PP_0405 0.68 -1.7
493,240 + PP_0405 0.68 +1.2
493,240 + PP_0405 0.68 +0.3
493,241 - PP_0405 0.68 +0.7
493,241 - PP_0405 0.68 +1.1
493,454 + PP_0405 0.89 -0.0
493,455 - PP_0405 0.89 +0.6
493,484 + -0.3
493,485 - +1.5
493,485 - -0.1
493,486 + -0.4
493,487 - +0.6
493,487 - +0.1
493,488 + -0.1
493,488 + -0.5
493,488 + +1.2
493,489 - +0.4
493,489 - +0.6
493,489 - +0.2
493,489 - -0.3
493,489 - -0.6
493,489 - +1.1
493,673 - PP_0406 0.16 +1.1
493,901 - PP_0406 0.50 -0.1
494,147 + PP_0406 0.86 +0.7
494,148 - PP_0406 0.86 +2.3
494,161 + PP_0406 0.88 +0.3
494,161 + PP_0406 0.88 +0.5
494,162 - PP_0406 0.89 -0.5
494,162 - PP_0406 0.89 +0.2
494,162 - PP_0406 0.89 -0.6
494,473 + PP_0407 0.30 +0.5
494,473 + PP_0407 0.30 -1.4

Or see this region's nucleotide sequence