Strain Fitness in Pseudomonas putida KT2440 around PP_1914

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1913 and PP_1914 are separated by 15 nucleotidesPP_1914 and PP_1915 are separated by 203 nucleotidesPP_1915 and PP_1916 are separated by 187 nucleotides PP_1913: PP_1913 - malonyl-CoA-ACP transacylase, at 2,156,697 to 2,157,635 _1913 PP_1914: PP_1914 - 3-oxoacyl-[acyl-carrier-protein] reductase subunit, at 2,157,651 to 2,158,391 _1914 PP_1915: PP_1915 - acyl carrier protein, at 2,158,595 to 2,158,831 _1915 PP_1916: PP_1916 - beta-ketoacyl-ACP synthase II / 3-oxo-cis-vaccenoyl-[acp] synthase / FabF / KASII / acetoacetyl-[acp] synthase, at 2,159,019 to 2,160,263 _1916 Position (kb) 2157 2158 2159Strain fitness (log2 ratio) -1 0 1at 2156.683 kb on + strandat 2156.683 kb on + strandat 2156.683 kb on + strandat 2158.389 kb on + strandat 2158.389 kb on + strandat 2158.389 kb on + strandat 2158.433 kb on + strandat 2158.456 kb on + strandat 2158.456 kb on + strandat 2158.456 kb on + strandat 2158.456 kb on + strandat 2158.456 kb on + strandat 2158.568 kb on + strandat 2158.568 kb on + strandat 2158.568 kb on + strandat 2158.568 kb on + strandat 2158.570 kb on + strandat 2158.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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2,156,683 + -0.3
2,156,683 + -0.3
2,156,683 + +0.2
2,158,389 + +0.0
2,158,389 + +1.1
2,158,389 + -0.0
2,158,433 + +0.2
2,158,456 + +0.1
2,158,456 + -0.4
2,158,456 + +0.0
2,158,456 + +1.7
2,158,456 + -0.7
2,158,568 + -0.3
2,158,568 + +0.1
2,158,568 + +0.4
2,158,568 + +0.5
2,158,570 + -0.9
2,158,570 + +0.5

Or see this region's nucleotide sequence