Strain Fitness in Pseudomonas putida KT2440 around PP_0567

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0565 and PP_0566 are separated by 239 nucleotidesPP_0566 and PP_0567 are separated by 150 nucleotidesPP_0567 and PP_0568 are separated by 166 nucleotidesPP_0568 and PP_0569 are separated by 126 nucleotides PP_0565: PP_0565 - putative enzyme, at 657,660 to 658,193 _0565 PP_0566: PP_0566 - translation-related factor, at 658,433 to 658,804 _0566 PP_0567: PP_0567 - Biosynthetic arginine decarboxylase, at 658,955 to 660,868 _0567 PP_0568: PP_0568 - conserved protein of unknown function, at 661,035 to 661,490 _0568 PP_0569: PP_0569 - MATE efflux family protein, at 661,617 to 662,954 _0569 Position (kb) 658 659 660 661Strain fitness (log2 ratio) -2 -1 0 1at 658.000 kb on - strand, within PP_0565at 658.039 kb on - strand, within PP_0565at 658.086 kb on - strand, within PP_0565at 658.143 kb on + strandat 658.144 kb on - strandat 658.144 kb on - strandat 658.176 kb on + strandat 658.176 kb on + strandat 658.176 kb on + strandat 658.192 kb on - strandat 658.192 kb on - strandat 658.279 kb on + strandat 658.296 kb on + strandat 658.296 kb on + strandat 658.297 kb on - strandat 658.302 kb on + strandat 658.479 kb on - strand, within PP_0566at 658.838 kb on - strandat 658.862 kb on + strandat 658.863 kb on - strandat 658.863 kb on - strandat 658.899 kb on + strandat 658.938 kb on - strandat 658.938 kb on - strandat 658.938 kb on - strandat 658.941 kb on + strandat 658.941 kb on + strandat 658.941 kb on + strandat 658.941 kb on + strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.942 kb on - strandat 658.988 kb on - strandat 658.988 kb on - strandat 659.021 kb on + strandat 659.022 kb on - strandat 659.173 kb on - strand, within PP_0567at 659.249 kb on + strand, within PP_0567at 659.261 kb on + strand, within PP_0567at 659.261 kb on + strand, within PP_0567at 659.261 kb on + strand, within PP_0567at 659.262 kb on - strand, within PP_0567at 659.423 kb on + strand, within PP_0567at 659.423 kb on + strand, within PP_0567at 659.424 kb on - strand, within PP_0567at 659.751 kb on - strand, within PP_0567at 659.781 kb on - strand, within PP_0567at 659.781 kb on - strand, within PP_0567at 659.783 kb on + strand, within PP_0567at 659.852 kb on + strand, within PP_0567at 659.852 kb on + strand, within PP_0567at 659.853 kb on - strand, within PP_0567at 659.891 kb on + strand, within PP_0567at 659.891 kb on + strand, within PP_0567at 659.907 kb on - strand, within PP_0567at 659.907 kb on - strand, within PP_0567at 659.907 kb on - strand, within PP_0567at 660.060 kb on + strand, within PP_0567at 660.061 kb on - strand, within PP_0567at 660.155 kb on + strand, within PP_0567at 660.155 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.174 kb on - strand, within PP_0567at 660.174 kb on - strand, within PP_0567at 660.248 kb on + strand, within PP_0567at 660.248 kb on + strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.504 kb on - strand, within PP_0567at 660.504 kb on - strand, within PP_0567at 660.566 kb on + strand, within PP_0567at 660.566 kb on + strand, within PP_0567at 660.597 kb on - strand, within PP_0567at 660.597 kb on - strand, within PP_0567at 660.657 kb on - strand, within PP_0567at 660.728 kb on + strandat 660.728 kb on + strandat 660.728 kb on + strandat 660.815 kb on + strandat 660.815 kb on + strandat 660.816 kb on - strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.932 kb on - strandat 660.966 kb on + strandat 660.970 kb on + strandat 661.003 kb on - strandat 661.034 kb on + strandat 661.060 kb on + strandat 661.096 kb on - strand, within PP_0568at 661.247 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.411 kb on - strand, within PP_0568at 661.461 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.834 kb on + strand, within PP_0569

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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658,000 - PP_0565 0.64 +0.2
658,039 - PP_0565 0.71 -0.2
658,086 - PP_0565 0.80 -1.5
658,143 + -0.9
658,144 - -0.4
658,144 - -0.7
658,176 + -0.1
658,176 + -1.0
658,176 + -0.9
658,192 - -0.4
658,192 - +0.8
658,279 + -0.3
658,296 + -0.7
658,296 + +0.0
658,297 - -0.7
658,302 + -0.1
658,479 - PP_0566 0.12 +0.5
658,838 - -1.2
658,862 + -1.4
658,863 - +0.1
658,863 - +0.5
658,899 + +0.2
658,938 - -1.5
658,938 - +1.1
658,938 - +0.1
658,941 + +0.6
658,941 + -0.9
658,941 + -0.3
658,941 + +0.1
658,942 - +0.1
658,942 - -0.8
658,942 - -0.6
658,942 - -0.4
658,942 - -0.6
658,942 - -0.2
658,942 - -0.8
658,988 - -0.1
658,988 - -0.2
659,021 + +1.1
659,022 - +0.2
659,173 - PP_0567 0.11 +1.2
659,249 + PP_0567 0.15 +0.4
659,261 + PP_0567 0.16 +0.8
659,261 + PP_0567 0.16 +0.3
659,261 + PP_0567 0.16 +0.3
659,262 - PP_0567 0.16 -0.1
659,423 + PP_0567 0.24 -0.3
659,423 + PP_0567 0.24 +0.3
659,424 - PP_0567 0.25 -0.3
659,751 - PP_0567 0.42 +1.0
659,781 - PP_0567 0.43 -0.8
659,781 - PP_0567 0.43 -0.7
659,783 + PP_0567 0.43 -0.7
659,852 + PP_0567 0.47 +0.5
659,852 + PP_0567 0.47 +0.2
659,853 - PP_0567 0.47 +0.3
659,891 + PP_0567 0.49 -0.8
659,891 + PP_0567 0.49 -0.3
659,907 - PP_0567 0.50 -1.9
659,907 - PP_0567 0.50 -0.4
659,907 - PP_0567 0.50 -0.3
660,060 + PP_0567 0.58 -0.6
660,061 - PP_0567 0.58 -1.6
660,155 + PP_0567 0.63 -0.5
660,155 + PP_0567 0.63 +0.9
660,173 + PP_0567 0.64 -0.3
660,173 + PP_0567 0.64 -0.9
660,173 + PP_0567 0.64 -0.2
660,173 + PP_0567 0.64 -0.4
660,173 + PP_0567 0.64 +0.6
660,174 - PP_0567 0.64 -0.5
660,174 - PP_0567 0.64 -0.6
660,248 + PP_0567 0.68 +0.8
660,248 + PP_0567 0.68 +0.0
660,249 - PP_0567 0.68 +0.4
660,249 - PP_0567 0.68 -0.7
660,249 - PP_0567 0.68 -0.4
660,348 - PP_0567 0.73 +0.2
660,348 - PP_0567 0.73 +0.4
660,348 - PP_0567 0.73 +0.1
660,504 - PP_0567 0.81 -0.4
660,504 - PP_0567 0.81 -0.3
660,566 + PP_0567 0.84 +0.5
660,566 + PP_0567 0.84 -0.0
660,597 - PP_0567 0.86 -0.4
660,597 - PP_0567 0.86 -0.0
660,657 - PP_0567 0.89 +0.3
660,728 + -0.8
660,728 + -0.2
660,728 + -0.6
660,815 + +0.0
660,815 + +0.2
660,816 - +0.4
660,854 + -0.1
660,854 + +0.4
660,854 + -0.3
660,855 - -0.8
660,855 - +0.7
660,855 - -1.1
660,932 - +0.4
660,966 + +0.1
660,970 + -0.5
661,003 - +0.4
661,034 + -0.2
661,060 + -0.3
661,096 - PP_0568 0.13 +1.1
661,247 + PP_0568 0.46 -1.1
661,317 + PP_0568 0.62 -0.1
661,317 + PP_0568 0.62 -0.2
661,318 - PP_0568 0.62 +0.3
661,318 - PP_0568 0.62 -0.6
661,343 + PP_0568 0.68 +1.3
661,343 + PP_0568 0.68 -1.3
661,343 + PP_0568 0.68 -0.0
661,343 + PP_0568 0.68 -0.3
661,344 - PP_0568 0.68 +0.4
661,344 - PP_0568 0.68 +0.3
661,410 + PP_0568 0.82 -0.0
661,410 + PP_0568 0.82 +0.9
661,411 - PP_0568 0.82 -0.3
661,461 + +0.2
661,480 + -0.9
661,480 + -0.3
661,480 + +0.1
661,480 + -0.1
661,481 - +0.4
661,481 - +0.2
661,481 - -0.3
661,481 - -0.0
661,481 - +0.7
661,834 + PP_0569 0.16 -0.6

Or see this region's nucleotide sequence