Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjhP and yjhQ are separated by 55 nucleotides yjhQ and yjhX are separated by 11 nucleotides yjhX and yjhZ are separated by 376 nucleotides yjhZ and yjhR are separated by 115 nucleotides
b4306: yjhP - KpLE2 phage-like element; predicted methyltransferase (NCBI), at 4,530,460 to 4,531,206
yjhP
b4307: yjhQ - KpLE2 phage-like element; predicted acetyltransferase (NCBI), at 4,531,262 to 4,531,807
yjhQ
b4566: yjhX - hypothetical protein (NCBI), at 4,531,819 to 4,532,076
yjhX
b4657: yjhZ - no description, at 4,532,453 to 4,532,698
yjhZ
b4308: yjhR - KpLE2 phage-like element; predicted frameshift suppressor (NCBI), at 4,532,814 to 4,534,054
yjhR
Position (kb)
4531
4532
4533 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4530.841 kb on - strand, within yjhP at 4530.977 kb on + strand, within yjhP at 4531.045 kb on - strand, within yjhP at 4531.057 kb on - strand, within yjhP at 4531.128 kb on + strand, within yjhP at 4531.128 kb on + strand, within yjhP at 4531.128 kb on - strand, within yjhP at 4531.152 kb on + strand at 4531.173 kb on - strand at 4531.196 kb on - strand at 4531.196 kb on - strand at 4531.265 kb on + strand at 4531.265 kb on + strand at 4531.288 kb on + strand at 4531.300 kb on + strand at 4531.317 kb on + strand, within yjhQ at 4531.322 kb on + strand, within yjhQ at 4531.356 kb on + strand, within yjhQ at 4531.366 kb on + strand, within yjhQ at 4531.366 kb on + strand, within yjhQ at 4531.384 kb on - strand, within yjhQ at 4531.385 kb on - strand, within yjhQ at 4531.414 kb on + strand, within yjhQ at 4531.414 kb on + strand, within yjhQ at 4531.433 kb on + strand, within yjhQ at 4531.433 kb on + strand, within yjhQ at 4531.433 kb on - strand, within yjhQ at 4531.487 kb on - strand, within yjhQ at 4531.487 kb on - strand, within yjhQ at 4531.487 kb on - strand, within yjhQ at 4531.487 kb on - strand, within yjhQ at 4531.492 kb on - strand, within yjhQ at 4531.492 kb on - strand, within yjhQ at 4531.512 kb on - strand, within yjhQ at 4531.528 kb on + strand, within yjhQ at 4531.558 kb on + strand, within yjhQ at 4531.572 kb on + strand, within yjhQ at 4531.687 kb on + strand, within yjhQ at 4531.702 kb on + strand, within yjhQ at 4531.754 kb on - strand at 4531.754 kb on - strand at 4531.755 kb on + strand at 4531.755 kb on + strand at 4531.801 kb on - strand at 4531.811 kb on - strand at 4531.871 kb on + strand, within yjhX at 4531.881 kb on + strand, within yjhX at 4531.940 kb on + strand, within yjhX at 4531.956 kb on + strand, within yjhX at 4531.956 kb on + strand, within yjhX at 4531.959 kb on + strand, within yjhX at 4531.959 kb on + strand, within yjhX at 4531.967 kb on - strand, within yjhX at 4531.967 kb on - strand, within yjhX at 4532.029 kb on - strand, within yjhX at 4532.029 kb on - strand, within yjhX at 4532.086 kb on + strand at 4532.089 kb on + strand at 4532.110 kb on + strand at 4532.118 kb on - strand at 4532.123 kb on - strand at 4532.123 kb on - strand at 4532.131 kb on - strand at 4532.161 kb on - strand at 4532.195 kb on + strand at 4532.207 kb on + strand at 4532.213 kb on + strand at 4532.225 kb on + strand at 4532.233 kb on - strand at 4532.233 kb on - strand at 4532.268 kb on + strand at 4532.268 kb on + strand at 4532.277 kb on - strand at 4532.277 kb on - strand at 4532.316 kb on + strand at 4532.329 kb on + strand at 4532.329 kb on + strand at 4532.348 kb on + strand at 4532.353 kb on + strand at 4532.356 kb on - strand at 4532.358 kb on + strand at 4532.367 kb on + strand at 4532.368 kb on + strand at 4532.376 kb on - strand at 4532.378 kb on + strand at 4532.380 kb on + strand at 4532.380 kb on + strand at 4532.383 kb on + strand at 4532.383 kb on + strand at 4532.435 kb on - strand at 4532.447 kb on - strand at 4532.452 kb on - strand at 4532.464 kb on - strand at 4532.530 kb on + strand, within yjhZ at 4532.535 kb on + strand, within yjhZ at 4532.535 kb on + strand, within yjhZ at 4532.547 kb on + strand, within yjhZ at 4532.547 kb on + strand, within yjhZ at 4532.553 kb on - strand, within yjhZ at 4532.568 kb on - strand, within yjhZ at 4532.568 kb on - strand, within yjhZ at 4532.568 kb on - strand, within yjhZ at 4532.577 kb on - strand, within yjhZ at 4532.582 kb on - strand, within yjhZ at 4532.597 kb on + strand, within yjhZ at 4532.603 kb on + strand, within yjhZ at 4532.603 kb on + strand, within yjhZ at 4532.604 kb on + strand, within yjhZ at 4532.611 kb on + strand, within yjhZ at 4532.611 kb on + strand, within yjhZ at 4532.613 kb on + strand, within yjhZ at 4532.613 kb on + strand, within yjhZ at 4532.613 kb on + strand, within yjhZ at 4532.613 kb on + strand, within yjhZ at 4532.617 kb on + strand, within yjhZ at 4532.618 kb on + strand, within yjhZ at 4532.618 kb on + strand, within yjhZ at 4532.621 kb on - strand, within yjhZ at 4532.621 kb on - strand, within yjhZ at 4532.622 kb on + strand, within yjhZ at 4532.623 kb on + strand, within yjhZ at 4532.625 kb on + strand, within yjhZ at 4532.625 kb on - strand, within yjhZ at 4532.625 kb on - strand, within yjhZ at 4532.626 kb on + strand, within yjhZ at 4532.626 kb on + strand, within yjhZ at 4532.626 kb on + strand, within yjhZ at 4532.629 kb on + strand, within yjhZ at 4532.629 kb on + strand, within yjhZ at 4532.629 kb on + strand, within yjhZ at 4532.629 kb on + strand, within yjhZ at 4532.630 kb on + strand, within yjhZ at 4532.630 kb on + strand, within yjhZ at 4532.630 kb on + strand, within yjhZ at 4532.630 kb on + strand, within yjhZ at 4532.631 kb on + strand, within yjhZ at 4532.631 kb on + strand, within yjhZ at 4532.631 kb on + strand, within yjhZ at 4532.631 kb on + strand, within yjhZ at 4532.633 kb on - strand, within yjhZ at 4532.633 kb on - strand, within yjhZ at 4532.635 kb on - strand, within yjhZ at 4532.635 kb on - strand, within yjhZ at 4532.635 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.637 kb on - strand, within yjhZ at 4532.639 kb on - strand, within yjhZ at 4532.642 kb on + strand, within yjhZ at 4532.642 kb on + strand, within yjhZ at 4532.648 kb on - strand, within yjhZ at 4532.648 kb on - strand, within yjhZ at 4532.648 kb on - strand, within yjhZ at 4532.648 kb on - strand, within yjhZ at 4532.710 kb on + strand at 4532.718 kb on - strand at 4532.728 kb on + strand at 4532.732 kb on + strand at 4532.732 kb on + strand at 4532.733 kb on + strand at 4532.733 kb on + strand at 4532.739 kb on - strand at 4532.740 kb on - strand at 4532.740 kb on - strand at 4532.741 kb on - strand at 4532.741 kb on - strand at 4532.746 kb on + strand at 4532.746 kb on + strand at 4532.749 kb on - strand at 4532.750 kb on - strand at 4532.750 kb on - strand at 4532.754 kb on - strand at 4532.760 kb on + strand at 4532.775 kb on + strand at 4532.783 kb on + strand at 4532.784 kb on + strand at 4532.784 kb on + strand at 4532.788 kb on + strand at 4532.792 kb on - strand at 4532.792 kb on - strand at 4532.792 kb on - strand at 4532.799 kb on + strand at 4532.803 kb on + strand at 4532.804 kb on - strand at 4532.804 kb on - strand at 4532.817 kb on - strand at 4532.817 kb on - strand at 4532.821 kb on - strand at 4532.852 kb on + strand at 4532.858 kb on - strand at 4532.859 kb on - strand at 4532.859 kb on - strand at 4532.860 kb on - strand at 4532.861 kb on + strand at 4532.861 kb on + strand at 4532.865 kb on - strand at 4532.865 kb on - strand at 4532.866 kb on + strand at 4532.867 kb on - strand at 4532.867 kb on - strand at 4532.867 kb on - strand at 4532.869 kb on - strand at 4532.869 kb on - strand at 4532.869 kb on - strand at 4532.869 kb on - strand at 4532.869 kb on - strand at 4532.874 kb on - strand at 4532.876 kb on + strand at 4532.876 kb on + strand at 4532.876 kb on + strand at 4532.883 kb on + strand at 4532.884 kb on - strand at 4532.884 kb on - strand at 4532.884 kb on - strand at 4532.884 kb on - strand at 4532.884 kb on - strand at 4532.886 kb on + strand at 4532.888 kb on + strand at 4532.888 kb on + strand at 4532.889 kb on - strand at 4532.892 kb on - strand at 4532.892 kb on - strand at 4532.892 kb on - strand at 4532.892 kb on - strand at 4532.896 kb on - strand at 4532.898 kb on - strand at 4532.898 kb on - strand at 4532.898 kb on - strand at 4532.900 kb on + strand at 4532.900 kb on + strand at 4532.900 kb on - strand at 4532.908 kb on - strand at 4532.912 kb on - strand at 4532.917 kb on + strand at 4532.917 kb on + strand at 4532.919 kb on + strand at 4532.919 kb on + strand at 4532.919 kb on + strand at 4532.920 kb on - strand at 4532.920 kb on - strand at 4532.921 kb on + strand at 4532.921 kb on + strand at 4532.925 kb on - strand at 4532.925 kb on - strand at 4532.925 kb on - strand at 4532.925 kb on - strand at 4532.925 kb on - strand at 4532.927 kb on + strand at 4532.927 kb on + strand at 4532.934 kb on + strand at 4532.935 kb on - strand at 4532.939 kb on + strand, within yjhR at 4532.939 kb on + strand, within yjhR at 4532.946 kb on + strand, within yjhR at 4532.947 kb on - strand, within yjhR at 4532.947 kb on - strand, within yjhR at 4532.966 kb on + strand, within yjhR at 4532.966 kb on + strand, within yjhR at 4532.966 kb on - strand, within yjhR at 4532.969 kb on - strand, within yjhR at 4532.974 kb on - strand, within yjhR at 4532.974 kb on - strand, within yjhR at 4532.974 kb on - strand, within yjhR at 4532.987 kb on + strand, within yjhR at 4532.993 kb on + strand, within yjhR at 4532.995 kb on - strand, within yjhR at 4532.995 kb on - strand, within yjhR at 4532.995 kb on - strand, within yjhR at 4532.995 kb on - strand, within yjhR at 4532.995 kb on - strand, within yjhR at 4532.999 kb on + strand, within yjhR at 4533.007 kb on - strand, within yjhR at 4533.068 kb on - strand, within yjhR
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 4,530,841 - yjhP b4306 0.51 +0.6 4,530,977 + yjhP b4306 0.69 +1.1 4,531,045 - yjhP b4306 0.78 +0.4 4,531,057 - yjhP b4306 0.80 -0.2 4,531,128 + yjhP b4306 0.89 -0.2 4,531,128 + yjhP b4306 0.89 -0.3 4,531,128 - yjhP b4306 0.89 -0.7 4,531,152 + -0.2 4,531,173 - +0.4 4,531,196 - +0.1 4,531,196 - +0.6 4,531,265 + +0.4 4,531,265 + +0.5 4,531,288 + -0.1 4,531,300 + +0.0 4,531,317 + yjhQ b4307 0.10 +0.0 4,531,322 + yjhQ b4307 0.11 +1.0 4,531,356 + yjhQ b4307 0.17 +0.5 4,531,366 + yjhQ b4307 0.19 +0.3 4,531,366 + yjhQ b4307 0.19 +0.2 4,531,384 - yjhQ b4307 0.22 +0.8 4,531,385 - yjhQ b4307 0.23 +0.7 4,531,414 + yjhQ b4307 0.28 -0.1 4,531,414 + yjhQ b4307 0.28 +0.3 4,531,433 + yjhQ b4307 0.31 -0.0 4,531,433 + yjhQ b4307 0.31 +0.2 4,531,433 - yjhQ b4307 0.31 +0.3 4,531,487 - yjhQ b4307 0.41 +0.4 4,531,487 - yjhQ b4307 0.41 +0.2 4,531,487 - yjhQ b4307 0.41 +0.8 4,531,487 - yjhQ b4307 0.41 -0.2 4,531,492 - yjhQ b4307 0.42 -0.4 4,531,492 - yjhQ b4307 0.42 +0.3 4,531,512 - yjhQ b4307 0.46 +0.8 4,531,528 + yjhQ b4307 0.49 -0.0 4,531,558 + yjhQ b4307 0.54 -0.3 4,531,572 + yjhQ b4307 0.57 +0.3 4,531,687 + yjhQ b4307 0.78 -0.5 4,531,702 + yjhQ b4307 0.81 -0.2 4,531,754 - +0.3 4,531,754 - +0.4 4,531,755 + +0.3 4,531,755 + -0.7 4,531,801 - +0.4 4,531,811 - +0.4 4,531,871 + yjhX b4566 0.20 +0.1 4,531,881 + yjhX b4566 0.24 +0.2 4,531,940 + yjhX b4566 0.47 +0.6 4,531,956 + yjhX b4566 0.53 +0.1 4,531,956 + yjhX b4566 0.53 +0.1 4,531,959 + yjhX b4566 0.54 +0.1 4,531,959 + yjhX b4566 0.54 +0.8 4,531,967 - yjhX b4566 0.57 +0.8 4,531,967 - yjhX b4566 0.57 +1.0 4,532,029 - yjhX b4566 0.81 +0.6 4,532,029 - yjhX b4566 0.81 -0.6 4,532,086 + +0.5 4,532,089 + +0.3 4,532,110 + +0.5 4,532,118 - +0.1 4,532,123 - +0.2 4,532,123 - +0.5 4,532,131 - +0.7 4,532,161 - +0.1 4,532,195 + -0.1 4,532,207 + -0.3 4,532,213 + +0.1 4,532,225 + -0.8 4,532,233 - -1.7 4,532,233 - -1.9 4,532,268 + +0.8 4,532,268 + +0.1 4,532,277 - +0.1 4,532,277 - +0.3 4,532,316 + -1.1 4,532,329 + -0.3 4,532,329 + +1.5 4,532,348 + -0.8 4,532,353 + +0.2 4,532,356 - -0.5 4,532,358 + +0.3 4,532,367 + -0.5 4,532,368 + +0.0 4,532,376 - +1.5 4,532,378 + +0.1 4,532,380 + -0.9 4,532,380 + -0.7 4,532,383 + +0.6 4,532,383 + +0.7 4,532,435 - +1.5 4,532,447 - +0.9 4,532,452 - -1.4 4,532,464 - -0.7 4,532,530 + yjhZ b4657 0.31 -0.5 4,532,535 + yjhZ b4657 0.33 -0.8 4,532,535 + yjhZ b4657 0.33 -0.7 4,532,547 + yjhZ b4657 0.38 +0.0 4,532,547 + yjhZ b4657 0.38 +0.2 4,532,553 - yjhZ b4657 0.41 -0.6 4,532,568 - yjhZ b4657 0.47 -1.3 4,532,568 - yjhZ b4657 0.47 -0.6 4,532,568 - yjhZ b4657 0.47 -0.5 4,532,577 - yjhZ b4657 0.50 +0.1 4,532,582 - yjhZ b4657 0.52 -0.4 4,532,597 + yjhZ b4657 0.59 -0.6 4,532,603 + yjhZ b4657 0.61 +0.4 4,532,603 + yjhZ b4657 0.61 -0.1 4,532,604 + yjhZ b4657 0.61 +1.1 4,532,611 + yjhZ b4657 0.64 -0.3 4,532,611 + yjhZ b4657 0.64 -0.2 4,532,613 + yjhZ b4657 0.65 +0.1 4,532,613 + yjhZ b4657 0.65 +0.1 4,532,613 + yjhZ b4657 0.65 -0.2 4,532,613 + yjhZ b4657 0.65 -0.3 4,532,617 + yjhZ b4657 0.67 +0.7 4,532,618 + yjhZ b4657 0.67 -1.3 4,532,618 + yjhZ b4657 0.67 +0.4 4,532,621 - yjhZ b4657 0.68 -0.2 4,532,621 - yjhZ b4657 0.68 -0.7 4,532,622 + yjhZ b4657 0.69 +0.3 4,532,623 + yjhZ b4657 0.69 -0.5 4,532,625 + yjhZ b4657 0.70 -0.6 4,532,625 - yjhZ b4657 0.70 -1.2 4,532,625 - yjhZ b4657 0.70 -0.1 4,532,626 + yjhZ b4657 0.70 +0.8 4,532,626 + yjhZ b4657 0.70 +0.2 4,532,626 + yjhZ b4657 0.70 -0.1 4,532,629 + yjhZ b4657 0.72 -0.5 4,532,629 + yjhZ b4657 0.72 -0.0 4,532,629 + yjhZ b4657 0.72 -0.6 4,532,629 + yjhZ b4657 0.72 -0.5 4,532,630 + yjhZ b4657 0.72 +0.7 4,532,630 + yjhZ b4657 0.72 +0.1 4,532,630 + yjhZ b4657 0.72 +0.4 4,532,630 + yjhZ b4657 0.72 +0.1 4,532,631 + yjhZ b4657 0.72 +0.5 4,532,631 + yjhZ b4657 0.72 +0.4 4,532,631 + yjhZ b4657 0.72 +0.8 4,532,631 + yjhZ b4657 0.72 +0.6 4,532,633 - yjhZ b4657 0.73 -1.2 4,532,633 - yjhZ b4657 0.73 -1.4 4,532,635 - yjhZ b4657 0.74 -0.9 4,532,635 - yjhZ b4657 0.74 -0.9 4,532,635 - yjhZ b4657 0.74 +0.8 4,532,637 - yjhZ b4657 0.75 -0.2 4,532,637 - yjhZ b4657 0.75 -0.5 4,532,637 - yjhZ b4657 0.75 -1.7 4,532,637 - yjhZ b4657 0.75 -0.3 4,532,637 - yjhZ b4657 0.75 -1.9 4,532,637 - yjhZ b4657 0.75 -0.9 4,532,637 - yjhZ b4657 0.75 +2.2 4,532,637 - yjhZ b4657 0.75 +3.1 4,532,637 - yjhZ b4657 0.75 -0.4 4,532,639 - yjhZ b4657 0.76 -0.3 4,532,642 + yjhZ b4657 0.77 +0.0 4,532,642 + yjhZ b4657 0.77 +0.7 4,532,648 - yjhZ b4657 0.79 -1.7 4,532,648 - yjhZ b4657 0.79 -0.1 4,532,648 - yjhZ b4657 0.79 -1.5 4,532,648 - yjhZ b4657 0.79 -0.3 4,532,710 + -0.6 4,532,718 - -0.1 4,532,728 + +0.4 4,532,732 + +0.3 4,532,732 + +0.4 4,532,733 + -0.1 4,532,733 + +0.3 4,532,739 - +0.6 4,532,740 - -0.1 4,532,740 - -1.3 4,532,741 - +0.0 4,532,741 - -1.5 4,532,746 + +0.4 4,532,746 + +0.3 4,532,749 - +0.1 4,532,750 - +0.1 4,532,750 - -0.1 4,532,754 - -0.0 4,532,760 + -0.2 4,532,775 + +0.3 4,532,783 + -0.7 4,532,784 + +0.5 4,532,784 + +0.4 4,532,788 + +0.1 4,532,792 - -1.1 4,532,792 - -0.4 4,532,792 - +0.6 4,532,799 + -0.0 4,532,803 + +0.4 4,532,804 - -1.1 4,532,804 - -1.1 4,532,817 - +0.7 4,532,817 - -1.3 4,532,821 - -0.2 4,532,852 + -0.1 4,532,858 - +0.5 4,532,859 - -0.5 4,532,859 - -0.1 4,532,860 - -0.2 4,532,861 + -0.4 4,532,861 + +0.2 4,532,865 - +0.1 4,532,865 - -0.3 4,532,866 + -1.3 4,532,867 - +0.3 4,532,867 - +0.7 4,532,867 - +0.4 4,532,869 - +0.3 4,532,869 - +0.3 4,532,869 - -0.2 4,532,869 - +1.0 4,532,869 - +0.4 4,532,874 - +0.1 4,532,876 + +0.3 4,532,876 + +0.1 4,532,876 + -0.6 4,532,883 + +0.1 4,532,884 - +0.0 4,532,884 - +0.2 4,532,884 - +0.9 4,532,884 - +0.6 4,532,884 - +1.0 4,532,886 + +0.1 4,532,888 + +0.3 4,532,888 + +0.3 4,532,889 - +0.1 4,532,892 - +1.2 4,532,892 - -0.6 4,532,892 - -0.9 4,532,892 - +0.2 4,532,896 - -0.9 4,532,898 - +0.4 4,532,898 - -0.5 4,532,898 - -0.7 4,532,900 + +0.1 4,532,900 + -0.2 4,532,900 - -0.3 4,532,908 - -0.7 4,532,912 - +0.0 4,532,917 + -0.3 4,532,917 + +1.0 4,532,919 + +0.4 4,532,919 + -0.6 4,532,919 + -0.9 4,532,920 - +0.7 4,532,920 - -0.4 4,532,921 + +0.6 4,532,921 + +0.1 4,532,925 - -0.3 4,532,925 - +0.8 4,532,925 - +0.2 4,532,925 - +1.0 4,532,925 - +0.2 4,532,927 + -1.2 4,532,927 + -0.1 4,532,934 + +0.0 4,532,935 - +0.4 4,532,939 + yjhR b4308 0.10 +0.1 4,532,939 + yjhR b4308 0.10 +0.0 4,532,946 + yjhR b4308 0.11 +0.0 4,532,947 - yjhR b4308 0.11 +0.3 4,532,947 - yjhR b4308 0.11 -0.4 4,532,966 + yjhR b4308 0.12 -1.1 4,532,966 + yjhR b4308 0.12 -0.5 4,532,966 - yjhR b4308 0.12 +0.3 4,532,969 - yjhR b4308 0.12 -0.3 4,532,974 - yjhR b4308 0.13 +0.9 4,532,974 - yjhR b4308 0.13 +0.0 4,532,974 - yjhR b4308 0.13 -0.0 4,532,987 + yjhR b4308 0.14 +0.6 4,532,993 + yjhR b4308 0.14 +0.1 4,532,995 - yjhR b4308 0.15 -0.5 4,532,995 - yjhR b4308 0.15 -0.4 4,532,995 - yjhR b4308 0.15 +0.2 4,532,995 - yjhR b4308 0.15 +0.4 4,532,995 - yjhR b4308 0.15 +0.5 4,532,999 + yjhR b4308 0.15 +0.3 4,533,007 - yjhR b4308 0.16 +0.1 4,533,068 - yjhR b4308 0.20 +0.2
Or see this region's nucleotide sequence