Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aldA and gapC are separated by 41 nucleotides gapC and cybB are separated by 188 nucleotides cybB and rydC are separated by 10 nucleotides rydC and ydcA are separated by 170 nucleotides
b1415: aldA - Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) , at 1,486,256 to 1,487,695
aldA
b4493: gapC - no description, at 1,487,737 to 1,488,737
gapC
b1418: cybB - cytochrome b(561) (VIMSS), at 1,488,926 to 1,489,456
cybB
b4597: rydC - sRNA regulator of yejABEF (RefSeq), at 1,489,467 to 1,489,530
rydC
b1419: ydcA - hypothetical protein (NCBI), at 1,489,701 to 1,489,874
ydcA
Position (kb)
1487
1488
1489 Strain fitness (log2 ratio)
-1
0
1 at 1486.932 kb on + strand, within aldA at 1486.932 kb on + strand, within aldA at 1487.097 kb on + strand, within aldA at 1487.294 kb on - strand, within aldA at 1487.351 kb on - strand, within aldA at 1487.490 kb on + strand, within aldA at 1487.801 kb on + strand at 1487.801 kb on + strand at 1487.921 kb on + strand, within gapC at 1488.063 kb on - strand, within gapC at 1488.092 kb on - strand, within gapC at 1488.654 kb on - strand at 1488.684 kb on + strand at 1488.684 kb on + strand at 1488.827 kb on + strand at 1489.026 kb on + strand, within cybB at 1489.028 kb on + strand, within cybB at 1489.032 kb on + strand, within cybB at 1489.032 kb on + strand, within cybB at 1489.616 kb on + strand at 1489.627 kb on + strand at 1489.651 kb on + strand at 1489.659 kb on - strand at 1489.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,486,932 + aldA b1415 0.47 +0.8 1,486,932 + aldA b1415 0.47 +0.5 1,487,097 + aldA b1415 0.58 +0.4 1,487,294 - aldA b1415 0.72 +1.0 1,487,351 - aldA b1415 0.76 +0.2 1,487,490 + aldA b1415 0.86 +0.8 1,487,801 + +1.6 1,487,801 + -0.9 1,487,921 + gapC b4493 0.18 +0.6 1,488,063 - gapC b4493 0.33 +0.4 1,488,092 - gapC b4493 0.35 +0.2 1,488,654 - -0.7 1,488,684 + -0.3 1,488,684 + +0.5 1,488,827 + +0.2 1,489,026 + cybB b1418 0.19 +0.7 1,489,028 + cybB b1418 0.19 -0.1 1,489,032 + cybB b1418 0.20 +1.4 1,489,032 + cybB b1418 0.20 -1.5 1,489,616 + +0.1 1,489,627 + -0.6 1,489,651 + +0.8 1,489,659 - +0.6 1,489,659 - +0.1
Or see this region's nucleotide sequence