Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbp and cdh are separated by 106 nucleotides cdh and tpiA are separated by 54 nucleotides tpiA and yiiQ are separated by 107 nucleotides
b3917: sbp - sulfate transporter subunit (NCBI), at 4,106,857 to 4,107,846
sbp
b3918: cdh - CDP-diacylglycerol pyrophosphatase (NCBI), at 4,107,953 to 4,108,708
cdh
b3919: tpiA - triosephosphate isomerase (NCBI), at 4,108,763 to 4,109,530
tpiA
b3920: yiiQ - hypothetical protein (NCBI), at 4,109,638 to 4,110,237
yiiQ
Position (kb)
4107
4108
4109 Strain fitness (log2 ratio)
-1
0
1 at 4106.970 kb on + strand, within sbp at 4106.970 kb on + strand, within sbp at 4106.970 kb on + strand, within sbp at 4106.999 kb on - strand, within sbp at 4106.999 kb on - strand, within sbp at 4107.116 kb on - strand, within sbp at 4107.144 kb on + strand, within sbp at 4107.159 kb on + strand, within sbp at 4107.167 kb on + strand, within sbp at 4107.179 kb on + strand, within sbp at 4107.187 kb on - strand, within sbp at 4107.189 kb on + strand, within sbp at 4107.238 kb on + strand, within sbp at 4107.292 kb on - strand, within sbp at 4107.292 kb on - strand, within sbp at 4107.299 kb on + strand, within sbp at 4107.321 kb on - strand, within sbp at 4107.321 kb on - strand, within sbp at 4107.329 kb on - strand, within sbp at 4107.339 kb on - strand, within sbp at 4107.357 kb on + strand, within sbp at 4107.357 kb on + strand, within sbp at 4107.369 kb on + strand, within sbp at 4107.369 kb on + strand, within sbp at 4107.472 kb on - strand, within sbp at 4107.502 kb on + strand, within sbp at 4107.562 kb on + strand, within sbp at 4107.562 kb on + strand, within sbp at 4107.574 kb on - strand, within sbp at 4107.598 kb on - strand, within sbp at 4107.693 kb on - strand, within sbp at 4107.695 kb on - strand, within sbp at 4107.695 kb on - strand, within sbp at 4107.704 kb on + strand, within sbp at 4107.712 kb on - strand, within sbp at 4107.771 kb on + strand at 4107.831 kb on + strand at 4107.831 kb on + strand at 4107.840 kb on + strand at 4107.929 kb on + strand at 4108.052 kb on + strand, within cdh at 4108.052 kb on + strand, within cdh at 4108.058 kb on - strand, within cdh at 4108.168 kb on - strand, within cdh at 4108.170 kb on - strand, within cdh at 4108.170 kb on - strand, within cdh at 4108.172 kb on + strand, within cdh at 4108.183 kb on + strand, within cdh at 4108.200 kb on + strand, within cdh at 4108.200 kb on + strand, within cdh at 4108.202 kb on - strand, within cdh at 4108.251 kb on + strand, within cdh at 4108.307 kb on + strand, within cdh at 4108.307 kb on + strand, within cdh at 4108.342 kb on - strand, within cdh at 4108.386 kb on - strand, within cdh at 4108.391 kb on - strand, within cdh at 4108.417 kb on - strand, within cdh at 4108.417 kb on - strand, within cdh at 4108.532 kb on - strand, within cdh at 4108.568 kb on - strand, within cdh at 4108.568 kb on - strand, within cdh at 4108.576 kb on - strand, within cdh at 4108.579 kb on + strand, within cdh at 4108.579 kb on + strand, within cdh at 4108.601 kb on - strand, within cdh at 4108.651 kb on + strand at 4109.521 kb on - strand at 4109.552 kb on - strand at 4109.575 kb on - strand at 4109.575 kb on - strand at 4109.671 kb on + strand at 4109.675 kb on + strand at 4109.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 4,106,970 + sbp b3917 0.11 +0.6 4,106,970 + sbp b3917 0.11 -0.6 4,106,970 + sbp b3917 0.11 -0.1 4,106,999 - sbp b3917 0.14 +0.4 4,106,999 - sbp b3917 0.14 -0.1 4,107,116 - sbp b3917 0.26 -0.9 4,107,144 + sbp b3917 0.29 -1.3 4,107,159 + sbp b3917 0.31 +0.1 4,107,167 + sbp b3917 0.31 +0.2 4,107,179 + sbp b3917 0.33 -0.6 4,107,187 - sbp b3917 0.33 +1.0 4,107,189 + sbp b3917 0.34 +0.4 4,107,238 + sbp b3917 0.38 +0.6 4,107,292 - sbp b3917 0.44 +0.7 4,107,292 - sbp b3917 0.44 +0.7 4,107,299 + sbp b3917 0.45 +0.9 4,107,321 - sbp b3917 0.47 -0.1 4,107,321 - sbp b3917 0.47 +0.1 4,107,329 - sbp b3917 0.48 +0.6 4,107,339 - sbp b3917 0.49 +0.2 4,107,357 + sbp b3917 0.51 +0.3 4,107,357 + sbp b3917 0.51 +0.6 4,107,369 + sbp b3917 0.52 +0.2 4,107,369 + sbp b3917 0.52 +1.0 4,107,472 - sbp b3917 0.62 -0.0 4,107,502 + sbp b3917 0.65 +0.7 4,107,562 + sbp b3917 0.71 -0.8 4,107,562 + sbp b3917 0.71 -0.6 4,107,574 - sbp b3917 0.72 -0.1 4,107,598 - sbp b3917 0.75 -0.2 4,107,693 - sbp b3917 0.84 -0.0 4,107,695 - sbp b3917 0.85 -1.0 4,107,695 - sbp b3917 0.85 -0.9 4,107,704 + sbp b3917 0.86 +0.3 4,107,712 - sbp b3917 0.86 -0.4 4,107,771 + -0.5 4,107,831 + +1.0 4,107,831 + +0.2 4,107,840 + -0.9 4,107,929 + -0.2 4,108,052 + cdh b3918 0.13 +0.3 4,108,052 + cdh b3918 0.13 +0.4 4,108,058 - cdh b3918 0.14 +0.2 4,108,168 - cdh b3918 0.28 +1.7 4,108,170 - cdh b3918 0.29 +0.7 4,108,170 - cdh b3918 0.29 +1.2 4,108,172 + cdh b3918 0.29 +0.3 4,108,183 + cdh b3918 0.30 -0.0 4,108,200 + cdh b3918 0.33 -1.7 4,108,200 + cdh b3918 0.33 +0.2 4,108,202 - cdh b3918 0.33 -1.1 4,108,251 + cdh b3918 0.39 +0.6 4,108,307 + cdh b3918 0.47 +0.2 4,108,307 + cdh b3918 0.47 +1.1 4,108,342 - cdh b3918 0.51 +0.9 4,108,386 - cdh b3918 0.57 +0.4 4,108,391 - cdh b3918 0.58 -0.4 4,108,417 - cdh b3918 0.61 +0.4 4,108,417 - cdh b3918 0.61 +0.6 4,108,532 - cdh b3918 0.77 +0.6 4,108,568 - cdh b3918 0.81 +0.5 4,108,568 - cdh b3918 0.81 +0.6 4,108,576 - cdh b3918 0.82 +0.9 4,108,579 + cdh b3918 0.83 -0.5 4,108,579 + cdh b3918 0.83 -0.6 4,108,601 - cdh b3918 0.86 -0.4 4,108,651 + -0.0 4,109,521 - +0.8 4,109,552 - +0.5 4,109,575 - +0.0 4,109,575 - +0.5 4,109,671 + -0.5 4,109,675 + -0.0 4,109,675 + -0.4
Or see this region's nucleotide sequence