Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frvR and frvX overlap by 1 nucleotides frvX and frvB overlap by 11 nucleotides
b3897: frvR - predicted regulator (NCBI), at 4,086,130 to 4,087,878
frvR
b3898: frvX - predicted endo-1,4-beta-glucanase (NCBI), at 4,087,878 to 4,088,948
frvX
b3899: frvB - PTS system, fructose-like enzyme IIBC component (VIMSS), at 4,088,938 to 4,090,389
frvB
Position (kb)
4087
4088
4089 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4086.906 kb on - strand, within frvR at 4086.913 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.923 kb on - strand, within frvR at 4086.925 kb on - strand, within frvR at 4086.932 kb on + strand, within frvR at 4086.932 kb on - strand, within frvR at 4086.932 kb on - strand, within frvR at 4086.935 kb on - strand, within frvR at 4086.952 kb on - strand, within frvR at 4086.952 kb on - strand, within frvR at 4086.955 kb on - strand, within frvR at 4086.962 kb on + strand, within frvR at 4086.962 kb on + strand, within frvR at 4086.963 kb on - strand, within frvR at 4086.985 kb on - strand, within frvR at 4086.990 kb on - strand, within frvR at 4086.994 kb on - strand, within frvR at 4086.999 kb on - strand, within frvR at 4086.999 kb on - strand, within frvR at 4086.999 kb on - strand, within frvR at 4087.000 kb on - strand, within frvR at 4087.002 kb on + strand, within frvR at 4087.005 kb on - strand, within frvR at 4087.005 kb on - strand, within frvR at 4087.007 kb on + strand, within frvR at 4087.008 kb on - strand, within frvR at 4087.008 kb on - strand, within frvR at 4087.008 kb on - strand, within frvR at 4087.008 kb on - strand, within frvR at 4087.009 kb on + strand, within frvR at 4087.009 kb on + strand, within frvR at 4087.009 kb on + strand, within frvR at 4087.010 kb on + strand, within frvR at 4087.010 kb on - strand, within frvR at 4087.010 kb on - strand, within frvR at 4087.012 kb on + strand, within frvR at 4087.013 kb on - strand, within frvR at 4087.015 kb on - strand, within frvR at 4087.015 kb on - strand, within frvR at 4087.017 kb on - strand, within frvR at 4087.017 kb on - strand, within frvR at 4087.017 kb on - strand, within frvR at 4087.017 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.018 kb on - strand, within frvR at 4087.027 kb on - strand, within frvR at 4087.027 kb on - strand, within frvR at 4087.028 kb on + strand, within frvR at 4087.031 kb on - strand, within frvR at 4087.033 kb on - strand, within frvR at 4087.062 kb on - strand, within frvR at 4087.062 kb on - strand, within frvR at 4087.074 kb on - strand, within frvR at 4087.106 kb on + strand, within frvR at 4087.106 kb on + strand, within frvR at 4087.106 kb on + strand, within frvR at 4087.106 kb on + strand, within frvR at 4087.112 kb on + strand, within frvR at 4087.112 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.113 kb on - strand, within frvR at 4087.114 kb on - strand, within frvR at 4087.114 kb on - strand, within frvR at 4087.114 kb on - strand, within frvR at 4087.114 kb on - strand, within frvR at 4087.117 kb on + strand, within frvR at 4087.117 kb on + strand, within frvR at 4087.117 kb on + strand, within frvR at 4087.117 kb on + strand, within frvR at 4087.125 kb on - strand, within frvR at 4087.125 kb on - strand, within frvR at 4087.159 kb on - strand, within frvR at 4087.163 kb on + strand, within frvR at 4087.176 kb on - strand, within frvR at 4087.182 kb on + strand, within frvR at 4087.182 kb on + strand, within frvR at 4087.183 kb on + strand, within frvR at 4087.193 kb on + strand, within frvR at 4087.193 kb on + strand, within frvR at 4087.214 kb on - strand, within frvR at 4087.224 kb on - strand, within frvR at 4087.224 kb on - strand, within frvR at 4087.229 kb on - strand, within frvR at 4087.255 kb on - strand, within frvR at 4087.255 kb on - strand, within frvR at 4087.257 kb on - strand, within frvR at 4087.258 kb on - strand, within frvR at 4087.264 kb on + strand, within frvR at 4087.268 kb on - strand, within frvR at 4087.272 kb on - strand, within frvR at 4087.275 kb on + strand, within frvR at 4087.283 kb on - strand, within frvR at 4087.307 kb on + strand, within frvR at 4087.307 kb on + strand, within frvR at 4087.315 kb on - strand, within frvR at 4087.319 kb on + strand, within frvR at 4087.319 kb on + strand, within frvR at 4087.327 kb on + strand, within frvR at 4087.327 kb on + strand, within frvR at 4087.333 kb on - strand, within frvR at 4087.333 kb on - strand, within frvR at 4087.345 kb on + strand, within frvR at 4087.345 kb on + strand, within frvR at 4087.345 kb on + strand, within frvR at 4087.345 kb on + strand, within frvR at 4087.350 kb on + strand, within frvR at 4087.350 kb on - strand, within frvR at 4087.353 kb on - strand, within frvR at 4087.353 kb on - strand, within frvR at 4087.353 kb on - strand, within frvR at 4087.358 kb on - strand, within frvR at 4087.358 kb on - strand, within frvR at 4087.364 kb on + strand, within frvR at 4087.364 kb on + strand, within frvR at 4087.392 kb on - strand, within frvR at 4087.446 kb on + strand, within frvR at 4087.454 kb on - strand, within frvR at 4087.488 kb on + strand, within frvR at 4087.488 kb on + strand, within frvR at 4087.491 kb on - strand, within frvR at 4087.491 kb on - strand, within frvR at 4087.491 kb on - strand, within frvR at 4087.506 kb on + strand, within frvR at 4087.573 kb on + strand, within frvR at 4087.585 kb on + strand, within frvR at 4087.608 kb on - strand, within frvR at 4087.610 kb on + strand, within frvR at 4087.624 kb on - strand, within frvR at 4087.624 kb on - strand, within frvR at 4087.624 kb on - strand, within frvR at 4087.746 kb on + strand at 4087.768 kb on + strand at 4087.774 kb on - strand at 4087.774 kb on - strand at 4087.878 kb on - strand at 4087.983 kb on - strand at 4087.995 kb on - strand, within frvX at 4087.995 kb on - strand, within frvX at 4088.017 kb on + strand, within frvX at 4088.025 kb on - strand, within frvX at 4088.027 kb on + strand, within frvX at 4088.064 kb on - strand, within frvX at 4088.064 kb on - strand, within frvX at 4088.094 kb on - strand, within frvX at 4088.108 kb on + strand, within frvX at 4088.319 kb on + strand, within frvX at 4088.358 kb on - strand, within frvX at 4088.358 kb on - strand, within frvX at 4088.358 kb on - strand, within frvX at 4088.651 kb on + strand, within frvX at 4088.651 kb on - strand, within frvX at 4088.653 kb on - strand, within frvX at 4088.660 kb on - strand, within frvX at 4088.692 kb on - strand, within frvX at 4088.692 kb on - strand, within frvX at 4088.727 kb on - strand, within frvX at 4088.727 kb on - strand, within frvX at 4088.729 kb on + strand, within frvX at 4088.801 kb on + strand, within frvX at 4088.855 kb on + strand at 4088.865 kb on + strand at 4088.865 kb on + strand at 4088.921 kb on - strand at 4088.921 kb on - strand at 4088.951 kb on - strand at 4089.064 kb on - strand at 4089.072 kb on + strand at 4089.147 kb on - strand, within frvB at 4089.149 kb on + strand, within frvB at 4089.284 kb on - strand, within frvB at 4089.284 kb on - strand, within frvB at 4089.516 kb on - strand, within frvB at 4089.535 kb on + strand, within frvB at 4089.608 kb on - strand, within frvB at 4089.625 kb on + strand, within frvB at 4089.724 kb on + strand, within frvB at 4089.731 kb on + strand, within frvB at 4089.824 kb on - strand, within frvB at 4089.824 kb on - strand, within frvB at 4089.825 kb on + strand, within frvB at 4089.825 kb on + strand, within frvB at 4089.863 kb on - strand, within frvB at 4089.899 kb on + strand, within frvB at 4089.948 kb on - strand, within frvB
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 4,086,906 - frvR b3897 0.44 +1.0 4,086,913 - frvR b3897 0.45 -0.5 4,086,923 - frvR b3897 0.45 -0.0 4,086,923 - frvR b3897 0.45 +0.3 4,086,923 - frvR b3897 0.45 -0.5 4,086,923 - frvR b3897 0.45 +0.2 4,086,923 - frvR b3897 0.45 +2.0 4,086,923 - frvR b3897 0.45 +0.5 4,086,923 - frvR b3897 0.45 -0.4 4,086,925 - frvR b3897 0.45 +0.6 4,086,932 + frvR b3897 0.46 -0.2 4,086,932 - frvR b3897 0.46 +0.5 4,086,932 - frvR b3897 0.46 -0.3 4,086,935 - frvR b3897 0.46 +0.2 4,086,952 - frvR b3897 0.47 +0.0 4,086,952 - frvR b3897 0.47 +0.3 4,086,955 - frvR b3897 0.47 -0.5 4,086,962 + frvR b3897 0.48 -1.7 4,086,962 + frvR b3897 0.48 +0.7 4,086,963 - frvR b3897 0.48 +0.1 4,086,985 - frvR b3897 0.49 +0.2 4,086,990 - frvR b3897 0.49 -0.6 4,086,994 - frvR b3897 0.49 -0.3 4,086,999 - frvR b3897 0.50 +0.5 4,086,999 - frvR b3897 0.50 -0.3 4,086,999 - frvR b3897 0.50 +0.7 4,087,000 - frvR b3897 0.50 -0.4 4,087,002 + frvR b3897 0.50 +0.4 4,087,005 - frvR b3897 0.50 +1.0 4,087,005 - frvR b3897 0.50 +1.3 4,087,007 + frvR b3897 0.50 +0.4 4,087,008 - frvR b3897 0.50 +0.8 4,087,008 - frvR b3897 0.50 +0.6 4,087,008 - frvR b3897 0.50 +0.2 4,087,008 - frvR b3897 0.50 +0.0 4,087,009 + frvR b3897 0.50 +0.2 4,087,009 + frvR b3897 0.50 +0.8 4,087,009 + frvR b3897 0.50 -1.3 4,087,010 + frvR b3897 0.50 +0.3 4,087,010 - frvR b3897 0.50 +0.6 4,087,010 - frvR b3897 0.50 +0.8 4,087,012 + frvR b3897 0.50 +0.2 4,087,013 - frvR b3897 0.50 +0.3 4,087,015 - frvR b3897 0.51 -0.3 4,087,015 - frvR b3897 0.51 -1.3 4,087,017 - frvR b3897 0.51 +0.1 4,087,017 - frvR b3897 0.51 +0.1 4,087,017 - frvR b3897 0.51 -0.1 4,087,017 - frvR b3897 0.51 +0.1 4,087,018 - frvR b3897 0.51 +0.2 4,087,018 - frvR b3897 0.51 -0.7 4,087,018 - frvR b3897 0.51 +0.6 4,087,018 - frvR b3897 0.51 -0.5 4,087,018 - frvR b3897 0.51 +0.4 4,087,018 - frvR b3897 0.51 -0.3 4,087,018 - frvR b3897 0.51 +0.9 4,087,018 - frvR b3897 0.51 -1.4 4,087,027 - frvR b3897 0.51 +0.5 4,087,027 - frvR b3897 0.51 -0.1 4,087,028 + frvR b3897 0.51 -1.0 4,087,031 - frvR b3897 0.52 -0.3 4,087,033 - frvR b3897 0.52 -0.1 4,087,062 - frvR b3897 0.53 +0.2 4,087,062 - frvR b3897 0.53 -0.3 4,087,074 - frvR b3897 0.54 -1.0 4,087,106 + frvR b3897 0.56 -0.4 4,087,106 + frvR b3897 0.56 -0.7 4,087,106 + frvR b3897 0.56 +0.8 4,087,106 + frvR b3897 0.56 +0.5 4,087,112 + frvR b3897 0.56 -0.8 4,087,112 - frvR b3897 0.56 +0.5 4,087,113 - frvR b3897 0.56 +0.9 4,087,113 - frvR b3897 0.56 -1.2 4,087,113 - frvR b3897 0.56 +0.5 4,087,113 - frvR b3897 0.56 +0.4 4,087,113 - frvR b3897 0.56 -0.4 4,087,113 - frvR b3897 0.56 -0.1 4,087,113 - frvR b3897 0.56 +0.7 4,087,114 - frvR b3897 0.56 +0.2 4,087,114 - frvR b3897 0.56 +0.9 4,087,114 - frvR b3897 0.56 +0.9 4,087,114 - frvR b3897 0.56 +0.1 4,087,117 + frvR b3897 0.56 -0.5 4,087,117 + frvR b3897 0.56 +0.4 4,087,117 + frvR b3897 0.56 -0.1 4,087,117 + frvR b3897 0.56 +0.9 4,087,125 - frvR b3897 0.57 +0.9 4,087,125 - frvR b3897 0.57 +0.8 4,087,159 - frvR b3897 0.59 +0.3 4,087,163 + frvR b3897 0.59 -1.2 4,087,176 - frvR b3897 0.60 -0.5 4,087,182 + frvR b3897 0.60 +0.6 4,087,182 + frvR b3897 0.60 +0.7 4,087,183 + frvR b3897 0.60 -0.2 4,087,193 + frvR b3897 0.61 +0.7 4,087,193 + frvR b3897 0.61 +0.1 4,087,214 - frvR b3897 0.62 +0.4 4,087,224 - frvR b3897 0.63 -1.3 4,087,224 - frvR b3897 0.63 -0.4 4,087,229 - frvR b3897 0.63 +0.4 4,087,255 - frvR b3897 0.64 -0.6 4,087,255 - frvR b3897 0.64 -1.9 4,087,257 - frvR b3897 0.64 -0.5 4,087,258 - frvR b3897 0.64 +0.5 4,087,264 + frvR b3897 0.65 +0.4 4,087,268 - frvR b3897 0.65 -0.3 4,087,272 - frvR b3897 0.65 +0.7 4,087,275 + frvR b3897 0.65 +0.5 4,087,283 - frvR b3897 0.66 +1.0 4,087,307 + frvR b3897 0.67 +0.5 4,087,307 + frvR b3897 0.67 +0.2 4,087,315 - frvR b3897 0.68 -0.3 4,087,319 + frvR b3897 0.68 +0.6 4,087,319 + frvR b3897 0.68 +0.7 4,087,327 + frvR b3897 0.68 +1.0 4,087,327 + frvR b3897 0.68 -0.1 4,087,333 - frvR b3897 0.69 -0.4 4,087,333 - frvR b3897 0.69 -0.2 4,087,345 + frvR b3897 0.69 +0.6 4,087,345 + frvR b3897 0.69 +0.8 4,087,345 + frvR b3897 0.69 -0.2 4,087,345 + frvR b3897 0.69 +0.2 4,087,350 + frvR b3897 0.70 +0.6 4,087,350 - frvR b3897 0.70 +0.0 4,087,353 - frvR b3897 0.70 +1.0 4,087,353 - frvR b3897 0.70 +0.0 4,087,353 - frvR b3897 0.70 -0.5 4,087,358 - frvR b3897 0.70 +0.5 4,087,358 - frvR b3897 0.70 +0.5 4,087,364 + frvR b3897 0.71 +0.7 4,087,364 + frvR b3897 0.71 +0.8 4,087,392 - frvR b3897 0.72 -0.0 4,087,446 + frvR b3897 0.75 -1.3 4,087,454 - frvR b3897 0.76 -0.9 4,087,488 + frvR b3897 0.78 -1.3 4,087,488 + frvR b3897 0.78 +1.0 4,087,491 - frvR b3897 0.78 +0.6 4,087,491 - frvR b3897 0.78 +0.4 4,087,491 - frvR b3897 0.78 -0.5 4,087,506 + frvR b3897 0.79 +1.2 4,087,573 + frvR b3897 0.83 -0.2 4,087,585 + frvR b3897 0.83 +0.3 4,087,608 - frvR b3897 0.85 -0.7 4,087,610 + frvR b3897 0.85 +0.6 4,087,624 - frvR b3897 0.85 +0.2 4,087,624 - frvR b3897 0.85 +1.6 4,087,624 - frvR b3897 0.85 -0.9 4,087,746 + +1.1 4,087,768 + +0.4 4,087,774 - +0.6 4,087,774 - -0.5 4,087,878 - -0.7 4,087,983 - -0.8 4,087,995 - frvX b3898 0.11 -0.0 4,087,995 - frvX b3898 0.11 +0.3 4,088,017 + frvX b3898 0.13 +0.4 4,088,025 - frvX b3898 0.14 +0.6 4,088,027 + frvX b3898 0.14 +0.5 4,088,064 - frvX b3898 0.17 +1.1 4,088,064 - frvX b3898 0.17 +1.2 4,088,094 - frvX b3898 0.20 +1.0 4,088,108 + frvX b3898 0.21 +0.8 4,088,319 + frvX b3898 0.41 +0.2 4,088,358 - frvX b3898 0.45 +0.2 4,088,358 - frvX b3898 0.45 +1.1 4,088,358 - frvX b3898 0.45 +0.3 4,088,651 + frvX b3898 0.72 -1.0 4,088,651 - frvX b3898 0.72 +0.3 4,088,653 - frvX b3898 0.72 +0.1 4,088,660 - frvX b3898 0.73 +1.2 4,088,692 - frvX b3898 0.76 -0.6 4,088,692 - frvX b3898 0.76 +0.2 4,088,727 - frvX b3898 0.79 +0.8 4,088,727 - frvX b3898 0.79 -0.3 4,088,729 + frvX b3898 0.79 +0.7 4,088,801 + frvX b3898 0.86 +0.4 4,088,855 + -0.7 4,088,865 + -0.1 4,088,865 + -0.2 4,088,921 - -0.0 4,088,921 - +0.5 4,088,951 - +0.6 4,089,064 - +0.0 4,089,072 + +0.3 4,089,147 - frvB b3899 0.14 +1.1 4,089,149 + frvB b3899 0.15 +0.0 4,089,284 - frvB b3899 0.24 +0.4 4,089,284 - frvB b3899 0.24 +0.5 4,089,516 - frvB b3899 0.40 +0.4 4,089,535 + frvB b3899 0.41 +0.0 4,089,608 - frvB b3899 0.46 -0.1 4,089,625 + frvB b3899 0.47 -0.7 4,089,724 + frvB b3899 0.54 +0.0 4,089,731 + frvB b3899 0.55 -0.6 4,089,824 - frvB b3899 0.61 -0.0 4,089,824 - frvB b3899 0.61 -0.1 4,089,825 + frvB b3899 0.61 +0.6 4,089,825 + frvB b3899 0.61 +0.3 4,089,863 - frvB b3899 0.64 +0.2 4,089,899 + frvB b3899 0.66 +0.5 4,089,948 - frvB b3899 0.70 -0.1
Or see this region's nucleotide sequence