Strain Fitness in Escherichia coli BW25113 around b3898

Experiment: 18 hr NoPredatorControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfrvR and frvX overlap by 1 nucleotidesfrvX and frvB overlap by 11 nucleotides b3897: frvR - predicted regulator (NCBI), at 4,086,130 to 4,087,878 frvR b3898: frvX - predicted endo-1,4-beta-glucanase (NCBI), at 4,087,878 to 4,088,948 frvX b3899: frvB - PTS system, fructose-like enzyme IIBC component (VIMSS), at 4,088,938 to 4,090,389 frvB Position (kb) 4087 4088 4089Strain fitness (log2 ratio) -2 -1 0 1 2at 4086.906 kb on - strand, within frvRat 4086.913 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.923 kb on - strand, within frvRat 4086.925 kb on - strand, within frvRat 4086.932 kb on + strand, within frvRat 4086.932 kb on - strand, within frvRat 4086.932 kb on - strand, within frvRat 4086.935 kb on - strand, within frvRat 4086.952 kb on - strand, within frvRat 4086.952 kb on - strand, within frvRat 4086.955 kb on - strand, within frvRat 4086.962 kb on + strand, within frvRat 4086.962 kb on + strand, within frvRat 4086.963 kb on - strand, within frvRat 4086.985 kb on - strand, within frvRat 4086.990 kb on - strand, within frvRat 4086.994 kb on - strand, within frvRat 4086.999 kb on - strand, within frvRat 4086.999 kb on - strand, within frvRat 4086.999 kb on - strand, within frvRat 4087.000 kb on - strand, within frvRat 4087.002 kb on + strand, within frvRat 4087.005 kb on - strand, within frvRat 4087.005 kb on - strand, within frvRat 4087.007 kb on + strand, within frvRat 4087.008 kb on - strand, within frvRat 4087.008 kb on - strand, within frvRat 4087.008 kb on - strand, within frvRat 4087.008 kb on - strand, within frvRat 4087.009 kb on + strand, within frvRat 4087.009 kb on + strand, within frvRat 4087.009 kb on + strand, within frvRat 4087.010 kb on + strand, within frvRat 4087.010 kb on - strand, within frvRat 4087.010 kb on - strand, within frvRat 4087.012 kb on + strand, within frvRat 4087.013 kb on - strand, within frvRat 4087.015 kb on - strand, within frvRat 4087.015 kb on - strand, within frvRat 4087.017 kb on - strand, within frvRat 4087.017 kb on - strand, within frvRat 4087.017 kb on - strand, within frvRat 4087.017 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.018 kb on - strand, within frvRat 4087.027 kb on - strand, within frvRat 4087.027 kb on - strand, within frvRat 4087.028 kb on + strand, within frvRat 4087.031 kb on - strand, within frvRat 4087.033 kb on - strand, within frvRat 4087.062 kb on - strand, within frvRat 4087.062 kb on - strand, within frvRat 4087.074 kb on - strand, within frvRat 4087.106 kb on + strand, within frvRat 4087.106 kb on + strand, within frvRat 4087.106 kb on + strand, within frvRat 4087.106 kb on + strand, within frvRat 4087.112 kb on + strand, within frvRat 4087.112 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.113 kb on - strand, within frvRat 4087.114 kb on - strand, within frvRat 4087.114 kb on - strand, within frvRat 4087.114 kb on - strand, within frvRat 4087.114 kb on - strand, within frvRat 4087.117 kb on + strand, within frvRat 4087.117 kb on + strand, within frvRat 4087.117 kb on + strand, within frvRat 4087.117 kb on + strand, within frvRat 4087.125 kb on - strand, within frvRat 4087.125 kb on - strand, within frvRat 4087.159 kb on - strand, within frvRat 4087.163 kb on + strand, within frvRat 4087.176 kb on - strand, within frvRat 4087.182 kb on + strand, within frvRat 4087.182 kb on + strand, within frvRat 4087.183 kb on + strand, within frvRat 4087.193 kb on + strand, within frvRat 4087.193 kb on + strand, within frvRat 4087.214 kb on - strand, within frvRat 4087.224 kb on - strand, within frvRat 4087.224 kb on - strand, within frvRat 4087.229 kb on - strand, within frvRat 4087.255 kb on - strand, within frvRat 4087.255 kb on - strand, within frvRat 4087.257 kb on - strand, within frvRat 4087.258 kb on - strand, within frvRat 4087.264 kb on + strand, within frvRat 4087.268 kb on - strand, within frvRat 4087.272 kb on - strand, within frvRat 4087.275 kb on + strand, within frvRat 4087.283 kb on - strand, within frvRat 4087.307 kb on + strand, within frvRat 4087.307 kb on + strand, within frvRat 4087.315 kb on - strand, within frvRat 4087.319 kb on + strand, within frvRat 4087.319 kb on + strand, within frvRat 4087.327 kb on + strand, within frvRat 4087.327 kb on + strand, within frvRat 4087.333 kb on - strand, within frvRat 4087.333 kb on - strand, within frvRat 4087.345 kb on + strand, within frvRat 4087.345 kb on + strand, within frvRat 4087.345 kb on + strand, within frvRat 4087.345 kb on + strand, within frvRat 4087.350 kb on + strand, within frvRat 4087.350 kb on - strand, within frvRat 4087.353 kb on - strand, within frvRat 4087.353 kb on - strand, within frvRat 4087.353 kb on - strand, within frvRat 4087.358 kb on - strand, within frvRat 4087.358 kb on - strand, within frvRat 4087.364 kb on + strand, within frvRat 4087.364 kb on + strand, within frvRat 4087.392 kb on - strand, within frvRat 4087.446 kb on + strand, within frvRat 4087.454 kb on - strand, within frvRat 4087.488 kb on + strand, within frvRat 4087.488 kb on + strand, within frvRat 4087.491 kb on - strand, within frvRat 4087.491 kb on - strand, within frvRat 4087.491 kb on - strand, within frvRat 4087.506 kb on + strand, within frvRat 4087.573 kb on + strand, within frvRat 4087.585 kb on + strand, within frvRat 4087.608 kb on - strand, within frvRat 4087.610 kb on + strand, within frvRat 4087.624 kb on - strand, within frvRat 4087.624 kb on - strand, within frvRat 4087.624 kb on - strand, within frvRat 4087.746 kb on + strandat 4087.768 kb on + strandat 4087.774 kb on - strandat 4087.774 kb on - strandat 4087.878 kb on - strandat 4087.983 kb on - strandat 4087.995 kb on - strand, within frvXat 4087.995 kb on - strand, within frvXat 4088.017 kb on + strand, within frvXat 4088.025 kb on - strand, within frvXat 4088.027 kb on + strand, within frvXat 4088.064 kb on - strand, within frvXat 4088.064 kb on - strand, within frvXat 4088.094 kb on - strand, within frvXat 4088.108 kb on + strand, within frvXat 4088.319 kb on + strand, within frvXat 4088.358 kb on - strand, within frvXat 4088.358 kb on - strand, within frvXat 4088.358 kb on - strand, within frvXat 4088.651 kb on + strand, within frvXat 4088.651 kb on - strand, within frvXat 4088.653 kb on - strand, within frvXat 4088.660 kb on - strand, within frvXat 4088.692 kb on - strand, within frvXat 4088.692 kb on - strand, within frvXat 4088.727 kb on - strand, within frvXat 4088.727 kb on - strand, within frvXat 4088.729 kb on + strand, within frvXat 4088.801 kb on + strand, within frvXat 4088.855 kb on + strandat 4088.865 kb on + strandat 4088.865 kb on + strandat 4088.921 kb on - strandat 4088.921 kb on - strandat 4088.951 kb on - strandat 4089.064 kb on - strandat 4089.072 kb on + strandat 4089.147 kb on - strand, within frvBat 4089.149 kb on + strand, within frvBat 4089.284 kb on - strand, within frvBat 4089.284 kb on - strand, within frvBat 4089.516 kb on - strand, within frvBat 4089.535 kb on + strand, within frvBat 4089.608 kb on - strand, within frvBat 4089.625 kb on + strand, within frvBat 4089.724 kb on + strand, within frvBat 4089.731 kb on + strand, within frvBat 4089.824 kb on - strand, within frvBat 4089.824 kb on - strand, within frvBat 4089.825 kb on + strand, within frvBat 4089.825 kb on + strand, within frvBat 4089.863 kb on - strand, within frvBat 4089.899 kb on + strand, within frvBat 4089.948 kb on - strand, within frvB

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Per-strain Table

Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl
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4,086,906 - frvR b3897 0.44 +1.0
4,086,913 - frvR b3897 0.45 -0.5
4,086,923 - frvR b3897 0.45 -0.0
4,086,923 - frvR b3897 0.45 +0.3
4,086,923 - frvR b3897 0.45 -0.5
4,086,923 - frvR b3897 0.45 +0.2
4,086,923 - frvR b3897 0.45 +2.0
4,086,923 - frvR b3897 0.45 +0.5
4,086,923 - frvR b3897 0.45 -0.4
4,086,925 - frvR b3897 0.45 +0.6
4,086,932 + frvR b3897 0.46 -0.2
4,086,932 - frvR b3897 0.46 +0.5
4,086,932 - frvR b3897 0.46 -0.3
4,086,935 - frvR b3897 0.46 +0.2
4,086,952 - frvR b3897 0.47 +0.0
4,086,952 - frvR b3897 0.47 +0.3
4,086,955 - frvR b3897 0.47 -0.5
4,086,962 + frvR b3897 0.48 -1.7
4,086,962 + frvR b3897 0.48 +0.7
4,086,963 - frvR b3897 0.48 +0.1
4,086,985 - frvR b3897 0.49 +0.2
4,086,990 - frvR b3897 0.49 -0.6
4,086,994 - frvR b3897 0.49 -0.3
4,086,999 - frvR b3897 0.50 +0.5
4,086,999 - frvR b3897 0.50 -0.3
4,086,999 - frvR b3897 0.50 +0.7
4,087,000 - frvR b3897 0.50 -0.4
4,087,002 + frvR b3897 0.50 +0.4
4,087,005 - frvR b3897 0.50 +1.0
4,087,005 - frvR b3897 0.50 +1.3
4,087,007 + frvR b3897 0.50 +0.4
4,087,008 - frvR b3897 0.50 +0.8
4,087,008 - frvR b3897 0.50 +0.6
4,087,008 - frvR b3897 0.50 +0.2
4,087,008 - frvR b3897 0.50 +0.0
4,087,009 + frvR b3897 0.50 +0.2
4,087,009 + frvR b3897 0.50 +0.8
4,087,009 + frvR b3897 0.50 -1.3
4,087,010 + frvR b3897 0.50 +0.3
4,087,010 - frvR b3897 0.50 +0.6
4,087,010 - frvR b3897 0.50 +0.8
4,087,012 + frvR b3897 0.50 +0.2
4,087,013 - frvR b3897 0.50 +0.3
4,087,015 - frvR b3897 0.51 -0.3
4,087,015 - frvR b3897 0.51 -1.3
4,087,017 - frvR b3897 0.51 +0.1
4,087,017 - frvR b3897 0.51 +0.1
4,087,017 - frvR b3897 0.51 -0.1
4,087,017 - frvR b3897 0.51 +0.1
4,087,018 - frvR b3897 0.51 +0.2
4,087,018 - frvR b3897 0.51 -0.7
4,087,018 - frvR b3897 0.51 +0.6
4,087,018 - frvR b3897 0.51 -0.5
4,087,018 - frvR b3897 0.51 +0.4
4,087,018 - frvR b3897 0.51 -0.3
4,087,018 - frvR b3897 0.51 +0.9
4,087,018 - frvR b3897 0.51 -1.4
4,087,027 - frvR b3897 0.51 +0.5
4,087,027 - frvR b3897 0.51 -0.1
4,087,028 + frvR b3897 0.51 -1.0
4,087,031 - frvR b3897 0.52 -0.3
4,087,033 - frvR b3897 0.52 -0.1
4,087,062 - frvR b3897 0.53 +0.2
4,087,062 - frvR b3897 0.53 -0.3
4,087,074 - frvR b3897 0.54 -1.0
4,087,106 + frvR b3897 0.56 -0.4
4,087,106 + frvR b3897 0.56 -0.7
4,087,106 + frvR b3897 0.56 +0.8
4,087,106 + frvR b3897 0.56 +0.5
4,087,112 + frvR b3897 0.56 -0.8
4,087,112 - frvR b3897 0.56 +0.5
4,087,113 - frvR b3897 0.56 +0.9
4,087,113 - frvR b3897 0.56 -1.2
4,087,113 - frvR b3897 0.56 +0.5
4,087,113 - frvR b3897 0.56 +0.4
4,087,113 - frvR b3897 0.56 -0.4
4,087,113 - frvR b3897 0.56 -0.1
4,087,113 - frvR b3897 0.56 +0.7
4,087,114 - frvR b3897 0.56 +0.2
4,087,114 - frvR b3897 0.56 +0.9
4,087,114 - frvR b3897 0.56 +0.9
4,087,114 - frvR b3897 0.56 +0.1
4,087,117 + frvR b3897 0.56 -0.5
4,087,117 + frvR b3897 0.56 +0.4
4,087,117 + frvR b3897 0.56 -0.1
4,087,117 + frvR b3897 0.56 +0.9
4,087,125 - frvR b3897 0.57 +0.9
4,087,125 - frvR b3897 0.57 +0.8
4,087,159 - frvR b3897 0.59 +0.3
4,087,163 + frvR b3897 0.59 -1.2
4,087,176 - frvR b3897 0.60 -0.5
4,087,182 + frvR b3897 0.60 +0.6
4,087,182 + frvR b3897 0.60 +0.7
4,087,183 + frvR b3897 0.60 -0.2
4,087,193 + frvR b3897 0.61 +0.7
4,087,193 + frvR b3897 0.61 +0.1
4,087,214 - frvR b3897 0.62 +0.4
4,087,224 - frvR b3897 0.63 -1.3
4,087,224 - frvR b3897 0.63 -0.4
4,087,229 - frvR b3897 0.63 +0.4
4,087,255 - frvR b3897 0.64 -0.6
4,087,255 - frvR b3897 0.64 -1.9
4,087,257 - frvR b3897 0.64 -0.5
4,087,258 - frvR b3897 0.64 +0.5
4,087,264 + frvR b3897 0.65 +0.4
4,087,268 - frvR b3897 0.65 -0.3
4,087,272 - frvR b3897 0.65 +0.7
4,087,275 + frvR b3897 0.65 +0.5
4,087,283 - frvR b3897 0.66 +1.0
4,087,307 + frvR b3897 0.67 +0.5
4,087,307 + frvR b3897 0.67 +0.2
4,087,315 - frvR b3897 0.68 -0.3
4,087,319 + frvR b3897 0.68 +0.6
4,087,319 + frvR b3897 0.68 +0.7
4,087,327 + frvR b3897 0.68 +1.0
4,087,327 + frvR b3897 0.68 -0.1
4,087,333 - frvR b3897 0.69 -0.4
4,087,333 - frvR b3897 0.69 -0.2
4,087,345 + frvR b3897 0.69 +0.6
4,087,345 + frvR b3897 0.69 +0.8
4,087,345 + frvR b3897 0.69 -0.2
4,087,345 + frvR b3897 0.69 +0.2
4,087,350 + frvR b3897 0.70 +0.6
4,087,350 - frvR b3897 0.70 +0.0
4,087,353 - frvR b3897 0.70 +1.0
4,087,353 - frvR b3897 0.70 +0.0
4,087,353 - frvR b3897 0.70 -0.5
4,087,358 - frvR b3897 0.70 +0.5
4,087,358 - frvR b3897 0.70 +0.5
4,087,364 + frvR b3897 0.71 +0.7
4,087,364 + frvR b3897 0.71 +0.8
4,087,392 - frvR b3897 0.72 -0.0
4,087,446 + frvR b3897 0.75 -1.3
4,087,454 - frvR b3897 0.76 -0.9
4,087,488 + frvR b3897 0.78 -1.3
4,087,488 + frvR b3897 0.78 +1.0
4,087,491 - frvR b3897 0.78 +0.6
4,087,491 - frvR b3897 0.78 +0.4
4,087,491 - frvR b3897 0.78 -0.5
4,087,506 + frvR b3897 0.79 +1.2
4,087,573 + frvR b3897 0.83 -0.2
4,087,585 + frvR b3897 0.83 +0.3
4,087,608 - frvR b3897 0.85 -0.7
4,087,610 + frvR b3897 0.85 +0.6
4,087,624 - frvR b3897 0.85 +0.2
4,087,624 - frvR b3897 0.85 +1.6
4,087,624 - frvR b3897 0.85 -0.9
4,087,746 + +1.1
4,087,768 + +0.4
4,087,774 - +0.6
4,087,774 - -0.5
4,087,878 - -0.7
4,087,983 - -0.8
4,087,995 - frvX b3898 0.11 -0.0
4,087,995 - frvX b3898 0.11 +0.3
4,088,017 + frvX b3898 0.13 +0.4
4,088,025 - frvX b3898 0.14 +0.6
4,088,027 + frvX b3898 0.14 +0.5
4,088,064 - frvX b3898 0.17 +1.1
4,088,064 - frvX b3898 0.17 +1.2
4,088,094 - frvX b3898 0.20 +1.0
4,088,108 + frvX b3898 0.21 +0.8
4,088,319 + frvX b3898 0.41 +0.2
4,088,358 - frvX b3898 0.45 +0.2
4,088,358 - frvX b3898 0.45 +1.1
4,088,358 - frvX b3898 0.45 +0.3
4,088,651 + frvX b3898 0.72 -1.0
4,088,651 - frvX b3898 0.72 +0.3
4,088,653 - frvX b3898 0.72 +0.1
4,088,660 - frvX b3898 0.73 +1.2
4,088,692 - frvX b3898 0.76 -0.6
4,088,692 - frvX b3898 0.76 +0.2
4,088,727 - frvX b3898 0.79 +0.8
4,088,727 - frvX b3898 0.79 -0.3
4,088,729 + frvX b3898 0.79 +0.7
4,088,801 + frvX b3898 0.86 +0.4
4,088,855 + -0.7
4,088,865 + -0.1
4,088,865 + -0.2
4,088,921 - -0.0
4,088,921 - +0.5
4,088,951 - +0.6
4,089,064 - +0.0
4,089,072 + +0.3
4,089,147 - frvB b3899 0.14 +1.1
4,089,149 + frvB b3899 0.15 +0.0
4,089,284 - frvB b3899 0.24 +0.4
4,089,284 - frvB b3899 0.24 +0.5
4,089,516 - frvB b3899 0.40 +0.4
4,089,535 + frvB b3899 0.41 +0.0
4,089,608 - frvB b3899 0.46 -0.1
4,089,625 + frvB b3899 0.47 -0.7
4,089,724 + frvB b3899 0.54 +0.0
4,089,731 + frvB b3899 0.55 -0.6
4,089,824 - frvB b3899 0.61 -0.0
4,089,824 - frvB b3899 0.61 -0.1
4,089,825 + frvB b3899 0.61 +0.6
4,089,825 + frvB b3899 0.61 +0.3
4,089,863 - frvB b3899 0.64 +0.2
4,089,899 + frvB b3899 0.66 +0.5
4,089,948 - frvB b3899 0.70 -0.1

Or see this region's nucleotide sequence